SMTL ID : 7fzw.1

Crystal Structure of human FABP4 in complex with 2-[[5-bromo-2-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)phenyl]carbamoyl]cyclopentene-1-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.16, E.17, N.18, F.19, D.20 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.16, A:S.16, A:F.19, A:D.20 Water bridges: A:E.17, A:N.18, A:D.21 SO4.2: 3 residues within 4Å: Chain A: R.111, D.114, R.133 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.111, A:R.133, A:R.133 Salt bridges: A:R.111, A:R.133

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 9 residues within 4Å: Chain A: I.54, K.55, S.56, T.63, E.64, I.65, E.75, H.96, R.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.56, A:T.63, A:I.65 DMS.5: 5 residues within 4Å: Chain A: T.63, E.64, I.65, E.75, V.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.76 DMS.7: 7 residues within 4Å: Chain A: V.97, S.104, T.105, T.106, V.121, M.122, K.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.104, A:T.106

1 x WI8: 2-{[(2M)-5-bromo-2-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)phenyl]carbamoyl}cyclopent-1-ene-1-carboxylic acid(Non-covalent)

WI8.4: 23 residues within 4Å: Chain A: F.19, Y.22, M.23, V.26, V.28, T.32, A.36, A.39, P.41, S.56, S.58, F.60, K.61, A.78, D.79, R.81, I.107, R.109, V.118, C.120, R.129, Y.131 Ligands: BR.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.19, A:F.19, A:Y.22, A:V.28, A:A.36, A:F.60, A:A.78 Hydrogen bonds: A:R.129, A:R.129, A:Y.131 Water bridges: A:S.56, A:S.56, A:R.109, A:R.109 Salt bridges: A:R.129 Halogen bonds: A:S.58

1 x BR: BROMIDE ION(Non-covalent)

BR.6: 6 residues within 4Å: Chain A: P.41, S.56, E.57, S.58, K.61 Ligands: WI8.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obst, U. et al., Crystal Structure of a human FABP4 complex. To be published

Release Date

2023-06-14

Peptides

Fatty acid-binding protein, adipocyte: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, adipocyte

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