SMTL ID : 7g9o.1

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z133716556

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: P.42, T.43, R.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.109, A:D.109, A:R.206

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: H.13, P.14, G.15, A.16, G.17, K.18, T.19, R.280 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.15, A:A.16, A:G.17, A:K.18, A:T.19 Water bridges: A:T.19, A:E.104, A:E.104, A:R.280, A:R.280, A:R.280 Salt bridges: A:K.18, A:R.280 PO4.3: 1 residues within 4Å: Chain A: L.260 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.419 Water bridges: A:R.206, A:R.206, A:H.304

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: A.82, S.86, S.111, L.311, M.354, K.355 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.82, A:L.311

1 x Z3H: N-[(4R)-3,4-dihydro-2H-1-benzopyran-4-yl]methanesulfonamide(Non-covalent)

Z3H.5: 7 residues within 4Å: Chain A: R.60, Y.61, M.62, T.63, T.64, H.70, R.87 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., PanDDA analysis group deposition. To Be Published

Release Date

2023-07-26

Peptides

Serine protease NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine protease NS3

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