SMTL ID : 7gar.1

PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z820676436

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x 2NU: 2-(4-bromanylpyrazol-1-yl)-~{N}-cyclopropyl-~{N}-methyl-ethanamide

2NU.1: 7 residues within 4Å: Chain A: K.50, F.53, L.54, V.55, P.56, I.67, R.71 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.55, A:I.67, A:I.67 Hydrogen bonds: A:K.50, A:L.54, A:R.71

8 x EDO: 1,2-ETHANEDIOL

EDO.2: 3 residues within 4Å: Chain A: H.87, S.88, V.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.87, A:S.88 EDO.3: 4 residues within 4Å: Chain A: K.9, F.14, R.17, D.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.9, A:R.17 EDO.4: 2 residues within 4Å: Chain A: R.69 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: S.62, I.65, K.66 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.62 EDO.6: 5 residues within 4Å: Chain A: E.37, R.38, Y.39, K.40, V.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.37 Water bridges: A:E.37 EDO.7: 5 residues within 4Å: Chain A: F.8, R.12, Q.16, R.17, D.20 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.12, A:D.20, A:K.52 EDO.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.9: 7 residues within 4Å: Chain A: H.87, M.89, V.90, S.91, T.94, V.99, E.103 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.90, A:S.91, A:S.91, A:T.94, A:E.103

1 x CL: CHLORIDE ION

CL.10: 3 residues within 4Å: Chain A: H.28, P.29, T.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-09-04

Peptides

Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated proteins 1A/1B light chain 3B

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