SMTL ID : 7gy4.1

Crystal Structure of HSP72 in complex with ligand 10 at 1.14 MGy X-ray dose.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: G.17, T.18, K.76, P.152, E.180 Ligands: MG.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.18, A:T.18, A:E.180, A:E.180, A:T.209 Water bridges: A:K.76, A:K.76, A:E.180, A:E.180, A:E.180, A:G.207, A:T.209 Salt bridges: A:K.76 PO4.5: 3 residues within 4Å: Chain A: R.263, R.266, R.267 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.263, A:R.266

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.54, L.55, I.56, K.131 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.56, A:K.131, A:K.131 Water bridges: A:A.59, A:E.134

1 x GBA: 8-bromoadenosine(Non-covalent)

GBA.3: 13 residues within 4Å: Chain A: T.19, Y.20, G.207, G.235, E.273, K.276, R.277, S.280, G.344, S.345, R.347, I.348, D.371 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.19, A:E.273, A:K.276, A:K.276, A:S.280, A:S.280 Water bridges: A:S.345

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: D.204 Ligands: PO4.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodrigues, M.J. et al., Specific radiation damage to halogenated inhibitors and ligands in protein-ligand crystal structures. J.Appl.Crystallogr. (2024)

Release Date

2024-12-11

Peptides

Heat shock 70 kDa protein 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock 70 kDa protein 1A

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