SMTL ID : 7h0g.1 (1 other biounit)

Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011210-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x 01: (4S)-6-{(1S)-1-[(6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]-2-methylpropyl}-2,3-dihydro-4H-1,4lambda~4~-benzoxathiin-4-one

01.1: 13 residues within 4Å: Chain A: D.22, I.23, A.38, G.48, V.49, A.52, L.126, A.129, G.130, F.132, A.154, F.156, L.160 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.49, A:A.129, A:F.156, A:L.160 Hydrogen bonds: A:D.22, A:I.23, A:V.49, A:F.156 Water bridges: A:S.128, A:F.156 pi-Stacking: A:F.156

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: D.145, T.146, R.148 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.145, A:R.148, A:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2024-05-15

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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