SMTL ID : 7h68.1

THE 1.25 A CRYSTAL STRUCTURE OF HUMAN CHYMASE IN COMPLEX WITH (2R)-2-benzyl-4-[(R)-(5-fluoro-3-methyl-1H-indol-2-yl)-phenylmethyl]-3-hydroxy-2H-furan-5-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.10, E.64, T.66 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.10, A:E.64, A:E.64

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: G.4, V.144, K.145, K.175 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: R.12, R.124, L.187, G.190 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: H.156, R.200 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: Y.17, E.19, T.52, T.54, I.60, W.67, K.69 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.54, A:K.69 Water bridges: A:E.19, A:I.60, A:I.60 GOL.6: 2 residues within 4Å: Chain A: P.171, R.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.171, A:R.172 Water bridges: A:R.172

1 x 01: (5R)-5-benzyl-3-[(R)-(5-fluoro-3-methyl-1H-indol-2-yl)(phenyl)methyl]-4-hydroxyfuran-2(5H)-one

01.7: 16 residues within 4Å: Chain A: K.28, F.29, C.30, H.45, L.86, A.177, F.178, K.179, G.180, S.182, V.196, S.197, Y.198, G.199, S.201, A.207 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.28, A:H.45, A:L.86, A:F.178, A:K.179, A:V.196, A:Y.198 Hydrogen bonds: A:H.45, A:S.182 Water bridges: A:F.29, A:G.180 Salt bridges: A:K.179 pi-Stacking: A:H.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markus, R. et al., Crystal structures of human Chymase and Cathepsin G. To be published

Release Date

2025-03-05

Peptides

Chymase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chymase

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