SMTL ID : 7h6g.1 (1 other biounit)

THE 1.21 A CRYSTAL STRUCTURE OF HUMAN CATHEPSIN G IN COMPLEX WITH N-[2-[6-fluoro-2-[(4-hydroxy-5-methyl-2-oxo-5-phenylfuran-3-yl)-phenylmethyl]-1H-indol-3-yl]ethyl]acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: P.9, H.10 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.10, H2O.8, H2O.8, H2O.9 ZN.2: 3 residues within 4Å: Chain A: T.53, H.68 Ligands: BTB.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.68

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.199, S.200 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.200, A:S.200 Water bridges: A:K.199 Salt bridges: A:K.199 SO4.4: 1 residues within 4Å: Chain A: R.102 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.102 SO4.5: 3 residues within 4Å: Chain A: R.72, R.73, Q.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.93 Water bridges: A:R.72 Salt bridges: A:R.72, A:R.73

1 x 01: N-(2-{6-fluoro-2-[(R)-[(5R)-4-hydroxy-5-methyl-2-oxo-5-phenyl-2,5-dihydrofuran-3-yl](phenyl)methyl]-1H-indol-3-yl}ethyl)acetamide

01.6: 21 residues within 4Å: Chain A: I.20, S.27, R.28, C.29, H.44, C.45, W.46, I.85, A.176, F.177, K.178, G.179, D.180, S.181, V.195, S.196, Y.197, G.198, K.199, S.200, E.206 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.44, A:I.85, A:F.177, A:K.178, A:Y.197 Hydrogen bonds: A:H.44, A:S.181, A:S.181 Water bridges: A:G.179, A:S.200 Salt bridges: A:K.178 pi-Stacking: A:H.44, A:H.44

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.7: 9 residues within 4Å: Chain A: Y.17, T.53, I.59, Q.60, R.61, R.62, Q.66, H.68 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.62, A:Q.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markus, R. et al., Crystal structures of human Chymase and Cathepsin G. To be published

Release Date

2025-03-05

Peptides

Cathepsin G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin G

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