SMTL ID : 7jgp.1

Crystal Structure of the Ni-bound Human Heavy-chain variant 122H-delta C-star with 2,5-furandihyrdoxamate at 318K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 6.42 Å

Oligo State

homo-24-mer

Ligands

72 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: H.122 Chain E: H.122 Chain I: H.122 Ligands: NI.17, NI.33 Ligand excluded by PLIP NI.2: 4 residues within 4Å: Chain A: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.3: 7 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.11, NI.83, NI.91 Ligand excluded by PLIP NI.5: 5 residues within 4Å: Chain B: H.122 Chain G: H.122 Chain L: H.122 Ligands: NI.25, NI.45 Ligand excluded by PLIP NI.6: 4 residues within 4Å: Chain B: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.7: 7 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.15, NI.87, NI.95 Ligand excluded by PLIP NI.9: 5 residues within 4Å: Chain C: H.122 Chain H: H.122 Chain J: H.122 Ligands: NI.29, NI.37 Ligand excluded by PLIP NI.10: 4 residues within 4Å: Chain C: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.11: 7 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.3, NI.83, NI.91 Ligand excluded by PLIP NI.13: 5 residues within 4Å: Chain D: H.122 Chain F: H.122 Chain K: H.122 Ligands: NI.21, NI.41 Ligand excluded by PLIP NI.14: 4 residues within 4Å: Chain D: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.15: 7 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.7, NI.87, NI.95 Ligand excluded by PLIP NI.17: 5 residues within 4Å: Chain A: H.122 Chain E: H.122 Chain I: H.122 Ligands: NI.1, NI.33 Ligand excluded by PLIP NI.18: 4 residues within 4Å: Chain E: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.19: 7 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.27, NI.71, NI.79 Ligand excluded by PLIP NI.21: 5 residues within 4Å: Chain D: H.122 Chain F: H.122 Chain K: H.122 Ligands: NI.13, NI.41 Ligand excluded by PLIP NI.22: 4 residues within 4Å: Chain F: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.23: 7 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.31, NI.67, NI.75 Ligand excluded by PLIP NI.25: 5 residues within 4Å: Chain B: H.122 Chain G: H.122 Chain L: H.122 Ligands: NI.5, NI.45 Ligand excluded by PLIP NI.26: 4 residues within 4Å: Chain G: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.27: 7 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.19, NI.71, NI.79 Ligand excluded by PLIP NI.29: 5 residues within 4Å: Chain C: H.122 Chain H: H.122 Chain J: H.122 Ligands: NI.9, NI.37 Ligand excluded by PLIP NI.30: 4 residues within 4Å: Chain H: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.31: 7 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.23, NI.67, NI.75 Ligand excluded by PLIP NI.33: 5 residues within 4Å: Chain A: H.122 Chain E: H.122 Chain I: H.122 Ligands: NI.1, NI.17 Ligand excluded by PLIP NI.34: 4 residues within 4Å: Chain I: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.35: 7 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.43, NI.51, NI.59 Ligand excluded by PLIP NI.37: 5 residues within 4Å: Chain C: H.122 Chain H: H.122 Chain J: H.122 Ligands: NI.9, NI.29 Ligand excluded by PLIP NI.38: 4 residues within 4Å: Chain J: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.39: 7 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.47, NI.55, NI.63 Ligand excluded by PLIP NI.41: 5 residues within 4Å: Chain D: H.122 Chain F: H.122 Chain K: H.122 Ligands: NI.13, NI.21 Ligand excluded by PLIP NI.42: 4 residues within 4Å: Chain K: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.43: 7 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.35, NI.51, NI.59 Ligand excluded by PLIP NI.45: 5 residues within 4Å: Chain B: H.122 Chain G: H.122 Chain L: H.122 Ligands: NI.5, NI.25 Ligand excluded by PLIP NI.46: 4 residues within 4Å: Chain L: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.47: 7 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.39, NI.55, NI.63 Ligand excluded by PLIP NI.49: 5 residues within 4Å: Chain M: H.122 Chain Q: H.122 Chain U: H.122 Ligands: NI.65, NI.81 Ligand excluded by PLIP NI.50: 4 residues within 4Å: Chain M: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.51: 7 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.35, NI.43, NI.59 Ligand excluded by PLIP NI.53: 5 residues within 4Å: Chain N: H.122 Chain S: H.122 Chain X: H.122 Ligands: NI.73, NI.93 Ligand excluded by PLIP NI.54: 4 residues within 4Å: Chain N: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.55: 7 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.39, NI.47, NI.63 Ligand excluded by PLIP NI.57: 5 residues within 4Å: Chain O: H.122 Chain T: H.122 Chain V: H.122 Ligands: NI.77, NI.85 Ligand excluded by PLIP NI.58: 4 residues within 4Å: Chain O: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.59: 7 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.35, NI.43, NI.51 Ligand excluded by PLIP NI.61: 5 residues within 4Å: Chain P: H.122 Chain R: H.122 Chain W: H.122 Ligands: NI.69, NI.89 Ligand excluded by PLIP NI.62: 4 residues within 4Å: Chain P: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.63: 7 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.39, NI.47, NI.55 Ligand excluded by PLIP NI.65: 5 residues within 4Å: Chain M: H.122 Chain Q: H.122 Chain U: H.122 Ligands: NI.49, NI.81 Ligand excluded by PLIP NI.66: 4 residues within 4Å: Chain Q: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.67: 7 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.23, NI.31, NI.75 Ligand excluded by PLIP NI.69: 5 residues within 4Å: Chain P: H.122 Chain R: H.122 Chain W: H.122 Ligands: NI.61, NI.89 Ligand excluded by PLIP NI.70: 4 residues within 4Å: Chain R: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.71: 7 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.19, NI.27, NI.79 Ligand excluded by PLIP NI.73: 5 residues within 4Å: Chain N: H.122 Chain S: H.122 Chain X: H.122 Ligands: NI.53, NI.93 Ligand excluded by PLIP NI.74: 4 residues within 4Å: Chain S: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.75: 7 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.23, NI.31, NI.67 Ligand excluded by PLIP NI.77: 5 residues within 4Å: Chain O: H.122 Chain T: H.122 Chain V: H.122 Ligands: NI.57, NI.85 Ligand excluded by PLIP NI.78: 4 residues within 4Å: Chain T: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.79: 7 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.19, NI.27, NI.71 Ligand excluded by PLIP NI.81: 5 residues within 4Å: Chain M: H.122 Chain Q: H.122 Chain U: H.122 Ligands: NI.49, NI.65 Ligand excluded by PLIP NI.82: 4 residues within 4Å: Chain U: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.83: 7 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.3, NI.11, NI.91 Ligand excluded by PLIP NI.85: 5 residues within 4Å: Chain O: H.122 Chain T: H.122 Chain V: H.122 Ligands: NI.57, NI.77 Ligand excluded by PLIP NI.86: 4 residues within 4Å: Chain V: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.87: 7 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.7, NI.15, NI.95 Ligand excluded by PLIP NI.89: 5 residues within 4Å: Chain P: H.122 Chain R: H.122 Chain W: H.122 Ligands: NI.61, NI.69 Ligand excluded by PLIP NI.90: 4 residues within 4Å: Chain W: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.91: 7 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.3, NI.11, NI.83 Ligand excluded by PLIP NI.93: 5 residues within 4Å: Chain N: H.122 Chain S: H.122 Chain X: H.122 Ligands: NI.53, NI.73 Ligand excluded by PLIP NI.94: 4 residues within 4Å: Chain X: E.27, E.62, H.65, Q.141 Ligand excluded by PLIP NI.95: 7 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.7, NI.15, NI.87 Ligand excluded by PLIP

24 x NA: SODIUM ION(Non-functional Binders)

NA.4: 8 residues within 4Å: Chain A: D.131, E.134 Chain E: D.131, E.134 Chain I: D.131, E.134 Ligands: NA.20, NA.36 Ligand excluded by PLIP NA.8: 8 residues within 4Å: Chain B: D.131, E.134 Chain G: D.131, E.134 Chain L: D.131, E.134 Ligands: NA.28, NA.48 Ligand excluded by PLIP NA.12: 8 residues within 4Å: Chain C: D.131, E.134 Chain H: D.131, E.134 Chain J: D.131, E.134 Ligands: NA.32, NA.40 Ligand excluded by PLIP NA.16: 8 residues within 4Å: Chain D: D.131, E.134 Chain F: D.131, E.134 Chain K: D.131, E.134 Ligands: NA.24, NA.44 Ligand excluded by PLIP NA.20: 8 residues within 4Å: Chain A: D.131, E.134 Chain E: D.131, E.134 Chain I: D.131, E.134 Ligands: NA.4, NA.36 Ligand excluded by PLIP NA.24: 8 residues within 4Å: Chain D: D.131, E.134 Chain F: D.131, E.134 Chain K: D.131, E.134 Ligands: NA.16, NA.44 Ligand excluded by PLIP NA.28: 8 residues within 4Å: Chain B: D.131, E.134 Chain G: D.131, E.134 Chain L: D.131, E.134 Ligands: NA.8, NA.48 Ligand excluded by PLIP NA.32: 8 residues within 4Å: Chain C: D.131, E.134 Chain H: D.131, E.134 Chain J: D.131, E.134 Ligands: NA.12, NA.40 Ligand excluded by PLIP NA.36: 8 residues within 4Å: Chain A: D.131, E.134 Chain E: D.131, E.134 Chain I: D.131, E.134 Ligands: NA.4, NA.20 Ligand excluded by PLIP NA.40: 8 residues within 4Å: Chain C: D.131, E.134 Chain H: D.131, E.134 Chain J: D.131, E.134 Ligands: NA.12, NA.32 Ligand excluded by PLIP NA.44: 8 residues within 4Å: Chain D: D.131, E.134 Chain F: D.131, E.134 Chain K: D.131, E.134 Ligands: NA.16, NA.24 Ligand excluded by PLIP NA.48: 8 residues within 4Å: Chain B: D.131, E.134 Chain G: D.131, E.134 Chain L: D.131, E.134 Ligands: NA.8, NA.28 Ligand excluded by PLIP NA.52: 8 residues within 4Å: Chain M: D.131, E.134 Chain Q: D.131, E.134 Chain U: D.131, E.134 Ligands: NA.68, NA.84 Ligand excluded by PLIP NA.56: 8 residues within 4Å: Chain N: D.131, E.134 Chain S: D.131, E.134 Chain X: D.131, E.134 Ligands: NA.76, NA.96 Ligand excluded by PLIP NA.60: 8 residues within 4Å: Chain O: D.131, E.134 Chain T: D.131, E.134 Chain V: D.131, E.134 Ligands: NA.80, NA.88 Ligand excluded by PLIP NA.64: 8 residues within 4Å: Chain P: D.131, E.134 Chain R: D.131, E.134 Chain W: D.131, E.134 Ligands: NA.72, NA.92 Ligand excluded by PLIP NA.68: 8 residues within 4Å: Chain M: D.131, E.134 Chain Q: D.131, E.134 Chain U: D.131, E.134 Ligands: NA.52, NA.84 Ligand excluded by PLIP NA.72: 8 residues within 4Å: Chain P: D.131, E.134 Chain R: D.131, E.134 Chain W: D.131, E.134 Ligands: NA.64, NA.92 Ligand excluded by PLIP NA.76: 8 residues within 4Å: Chain N: D.131, E.134 Chain S: D.131, E.134 Chain X: D.131, E.134 Ligands: NA.56, NA.96 Ligand excluded by PLIP NA.80: 8 residues within 4Å: Chain O: D.131, E.134 Chain T: D.131, E.134 Chain V: D.131, E.134 Ligands: NA.60, NA.88 Ligand excluded by PLIP NA.84: 8 residues within 4Å: Chain M: D.131, E.134 Chain Q: D.131, E.134 Chain U: D.131, E.134 Ligands: NA.52, NA.68 Ligand excluded by PLIP NA.88: 8 residues within 4Å: Chain O: D.131, E.134 Chain T: D.131, E.134 Chain V: D.131, E.134 Ligands: NA.60, NA.80 Ligand excluded by PLIP NA.92: 8 residues within 4Å: Chain P: D.131, E.134 Chain R: D.131, E.134 Chain W: D.131, E.134 Ligands: NA.64, NA.72 Ligand excluded by PLIP NA.96: 8 residues within 4Å: Chain N: D.131, E.134 Chain S: D.131, E.134 Chain X: D.131, E.134 Ligands: NA.56, NA.76 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, J.B. et al., Tunable and Cooperative Thermomechanical Properties of Protein-Metal-Organic Frameworks. J.Am.Chem.Soc. (2020)

Release Date

2020-10-14

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin heavy chain

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