SMTL ID : 7jh4.1 (2 other biounits)

Crystal structure of NAD(P)H-flavin oxidoreductase (NfoR) from S. aureus complexed with reduced FMN and NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)

FNR.1: 25 residues within 4Å: Chain A: R.15, H.16, A.17, K.19, G.71, A.72, Q.75, Y.145, L.148, C.163, P.164, M.165, E.166, G.167, V.192, K.207, R.209 Chain B: P.43, S.44, S.45, L.46, G.47, Q.143, I.146 Ligands: NAD.3 20 PLIP interactions: 15 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Y.145, A:P.164, B:I.146 Hydrogen bonds: A:A.17, A:K.19, A:G.71, A:Q.75, A:E.166, A:G.167, B:S.44, B:S.44, B:L.46, B:G.47 Water bridges: A:K.207, A:K.207, A:R.209, A:R.209 Salt bridges: A:R.15, A:K.207, A:R.209 FNR.2: 25 residues within 4Å: Chain A: P.43, S.44, S.45, L.46, G.47, K.106, Q.143, I.146 Chain B: R.15, H.16, A.17, K.19, G.71, A.72, Q.75, Y.145, L.148, C.163, P.164, M.165, E.166, G.167, V.192, K.207, R.209 21 PLIP interactions: 15 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:Y.145, B:P.164, A:P.43, A:I.146 Hydrogen bonds: B:A.17, B:K.19, B:K.19, B:G.71, B:Q.75, B:E.166, B:G.167, A:S.44, A:S.44, A:G.47 Water bridges: B:K.207, B:K.207, B:R.209, A:K.106 Salt bridges: B:R.15, B:K.207, B:R.209

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 5 residues within 4Å: Chain A: G.167 Chain B: S.45, L.46, F.123 Ligands: FNR.1 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.46 Hydrogen bonds: B:L.46 pi-Stacking: B:F.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Neill, A.G. et al., NfoR: Chromate Reductase or Flavin Mononucleotide Reductase?. Appl.Environ.Microbiol. (2020)

Release Date

2020-09-16

Peptides

NAD(P)H-dependent oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD(P)H-dependent oxidoreductase

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