SMTL ID : 7jhi.4 (3 other biounits)

Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 iodide-derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 11 residues within 4Å: Chain A: R.102, D.105, F.106, Y.109, Y.115, Y.200, R.201, T.203, F.205, N.206, L.209 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.115 Hydrogen bonds: A:Y.115, A:R.201

8 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: D.101, R.102 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: K.128, F.130 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: Q.50, N.54, K.329 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: H.141, A.143, R.144 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: L.117, R.216, W.217 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: H.240 Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain A: T.139, T.172, L.181, S.182 Ligand excluded by PLIP IOD.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 4 residues within 4Å: Chain A: C.125, C.222, P.223, D.224 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: R.201 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, Y. et al., Structures and mechanism of human glycosyltransferase beta 1,3-N-acetylglucosaminyltransferase 2 (B3GNT2), an important player in immune homeostasis. J.Biol.Chem. (2020)

Release Date

2020-11-18

Peptides

N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

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