SMTL ID : 7jhk.1 (3 other biounits)

Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 in unliganded form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 12 residues within 4Å: Chain A: C.69, R.88, D.91, F.92, Y.95, Y.101, Y.186, R.187, T.189, F.191, N.192 Ligands: NAG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.95, A:D.91, A:R.187 Hydrophobic interactions: A:Y.101

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.67, C.69, N.100, Y.101 Ligands: NAG-NAG-BMA.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.101 Hydrogen bonds: A:N.100

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: H.127, F.128, A.129, R.130 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: K.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, Y. et al., Structures and mechanism of human glycosyltransferase beta 1,3-N-acetylglucosaminyltransferase 2 (B3GNT2), an important player in immune homeostasis. J.Biol.Chem. (2020)

Release Date

2020-11-18

Peptides

N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

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