SMTL ID : 7jij.1

ATP-bound AMP-activated protein kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 5.50 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 12 residues within 4Å: Chain A: N.14, D.16, E.46, A.65, D.67, R.68, E.155, P.156, Y.157, W.232, W.342, R.346 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.67, A:R.68, A:R.68, A:Y.157, A:R.346

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 15 residues within 4Å: Chain B: P.351 Chain D: R.49, R.131, K.149, I.219, S.221, F.223, D.224, R.248, V.255, L.256, E.275, V.276, H.277, R.278 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:S.221, D:D.224, D:R.248, D:R.248, D:L.256, D:R.278 Salt bridges: D:R.49, D:R.49, D:R.131, D:K.149, D:K.149, D:K.149

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 12 residues within 4Å: Chain D: K.128, H.130, T.179, N.182, R.203, V.204, S.205, A.206, H.277, S.293, S.295, D.296 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:T.179, D:S.205, D:A.206, D:S.293, D:S.295, D:D.296 Salt bridges: D:H.130, D:H.277

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 13 residues within 4Å: Chain D: R.49, M.64, T.66, T.68, D.69, P.107, L.108, V.109, I.129, H.130, R.131, P.133, K.222 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:T.66, D:T.68, D:D.69, D:V.109, D:V.109, D:H.130, D:R.131 Salt bridges: D:R.49, D:H.130, D:H.130, D:K.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y. et al., Structure of an AMPK complex in an inactive, ATP-bound state. Science (2021)

Release Date

2021-07-28

Peptides

Maltose/maltodextrin ABC transporter substrate-binding protein MalE: A
5'-AMP-activated protein kinase catalytic subunit alpha-1: B
5'-AMP-activated protein kinase subunit beta-2: C
5'-AMP-activated protein kinase subunit gamma-1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
A

C
B

D
G

Maltose/maltodextrin ABC transporter substrate-binding protein MalE

5'-AMP-activated protein kinase catalytic subunit alpha-1

5'-AMP-activated protein kinase subunit beta-2

5'-AMP-activated protein kinase subunit gamma-1

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