SMTL ID : 7jiu.1

HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 2F

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x VBS: (3S)-3-benzyl-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]-3-methyl-1,3-dihydro-2H-indol-2-one(Non-covalent)

VBS.1: 13 residues within 4Å: Chain A: R.664, M.666, W.674, I.694, K.696, Y.730, I.742, E.743, V.744, V.745, S.748, Q.753, I.826 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.664, A:W.674, A:W.674, A:Y.730, A:I.742, A:V.745 Hydrogen bonds: A:V.745, A:D.827 pi-Cation interactions: A:R.664

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Methot, J.L. et al., Optimization of Versatile Oxindoles as Selective PI3K delta Inhibitors. Acs Med.Chem.Lett. (2020)

Release Date

2021-06-30

Peptides

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform