SMTL ID : 7jix.1

Murine antibody that engages the influenza hemagglutinin receptor binding site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 11 residues within 4Å: Chain A: N.72, E.74, E.94, N.95, C.98, S.142, C.143, S.144, K.226, R.228 Ligands: NAG-NAG-BMA.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.226

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 1 residues within 4Å: Chain A: N.133 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 4 residues within 4Å: Chain A: N.62 Chain D: T.197, K.214 Ligands: NAG-NAG-BMA-MAN-MAN.1 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.197, D:T.197, D:T.197, D:K.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bajic, G. et al., Murine antibody that engages the influenza hemagglutinin receptor binding site. To Be Published

Release Date

2021-07-28

Peptides

Hemagglutinin HA1 chain: A
Hemagglutinin HA2 chain: B
Fab light chain: C
Fab heavy chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
L

D
H

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

Fab light chain

Fab heavy chain

Related Entries With Identical Sequence