SMTL ID : 7jlv.1

Structure of the activated Roq1 resistosome directly recognizing the pathogen effector XopQ

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: L.190, V.191, I.193, G.220, G.221, V.222, G.223, K.224, T.225, T.226, D.301, R.329, P.386, K.390 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:V.191, A:V.191, A:G.221, A:K.224, A:T.225, A:T.225, A:T.226, A:D.301 Salt bridges: A:K.224, A:R.329 ATP.3: 15 residues within 4Å: Chain B: L.190, V.191, I.193, G.220, G.221, V.222, G.223, K.224, T.225, T.226, D.301, R.329, P.386, K.390 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:V.191, B:V.191, B:G.221, B:K.224, B:T.225, B:T.225, B:T.226, B:D.301 Salt bridges: B:K.224, B:R.329 ATP.5: 15 residues within 4Å: Chain C: L.190, V.191, I.193, G.220, G.221, V.222, G.223, K.224, T.225, T.226, D.301, R.329, P.386, K.390 Ligands: MG.6 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:V.191, C:V.191, C:G.221, C:K.224, C:T.225, C:T.225, C:T.226, C:D.301 Salt bridges: C:K.224, C:R.329 ATP.7: 15 residues within 4Å: Chain D: L.190, V.191, I.193, G.220, G.221, V.222, G.223, K.224, T.225, T.226, D.301, R.329, P.386, K.390 Ligands: MG.8 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:V.191, D:V.191, D:G.221, D:K.224, D:T.225, D:T.225, D:T.226, D:D.301 Salt bridges: D:K.224, D:R.329

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.225, D.300 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.225 MG.4: 3 residues within 4Å: Chain B: T.225, D.300 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.225 MG.6: 3 residues within 4Å: Chain C: T.225, D.300 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.225 MG.8: 3 residues within 4Å: Chain D: T.225, D.300 Ligands: ATP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, R. et al., Structure of the activated ROQ1 resistosome directly recognizing the pathogen effector XopQ. Science (2020)

Release Date

2020-12-02

Peptides

Disease resistance protein Roq1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
G

Disease resistance protein Roq1