SMTL ID : 7jlz.1

Crystal structure of 30S ribosomal A1408 methyltransferase from an uncultured bacterium (UncKam)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.5, G.6, K.7, R.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.5, A:K.7 Salt bridges: A:R.66 SO4.2: 4 residues within 4Å: Chain A: L.80, Y.85, P.87 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.85 SO4.3: 4 residues within 4Å: Chain A: M.1, K.2, E.89 Ligands: SO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.1 Water bridges: A:K.2, A:K.2, A:K.2, A:E.11 Salt bridges: A:K.2 SO4.4: 5 residues within 4Å: Chain A: R.37, K.186, S.190, T.191, W.192 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.191, A:T.191, A:W.192 Water bridges: A:R.37, A:S.190, A:S.190 Salt bridges: A:R.37, A:K.186 SO4.5: 2 residues within 4Å: Chain A: K.67, E.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.71 Salt bridges: A:K.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nosrati, M. et al., Roles of conserved tryptophans in substrate recognition and catalysis by the aminoglycoside-resistance 16S rRNA (m1A1408) rRNA methyltransferases. To be published

Release Date

2021-08-04

Peptides

16S rRNA methylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

16S rRNA methylase