SMTL ID : 7jnd.1

The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: K.89, D.92, N.94, T.97, A.200, E.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.89, A:N.94, A:T.97, A:A.200, A:E.201 CA.2: 6 residues within 4Å: Chain A: K.314, D.317, D.319, T.322, N.422, E.423 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.314, A:D.317, A:D.319, A:T.322, A:E.423

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: Y.280, Y.286 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.350 GOL.4: 5 residues within 4Å: Chain A: L.52, Y.61, E.174, N.211, I.248 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.61 Water bridges: A:N.211, A:N.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-02-03

Peptides

F5/8 type C domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F5/8 type C domain protein

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