SMTL ID : 7jp3.1

Des-B29,B30-insulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

6 x IPH: PHENOL(Non-covalent)

IPH.1: 8 residues within 4Å: Chain A: C.7, H.10, L.11, A.14, C.34, I.38, C.39, L.44 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.10, A:A.14 Hydrogen bonds: A:C.39, A:C.39 IPH.3: 9 residues within 4Å: Chain B: C.7, H.10, L.11, A.14, C.34, S.37, I.38, C.39 Chain F: H.5 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain F Hydrophobic interactions: B:H.10, B:L.11, B:A.14 Hydrogen bonds: B:C.34, B:C.39 pi-Stacking: F:H.5 IPH.7: 7 residues within 4Å: Chain C: C.7, L.11, A.14, C.34, S.37, I.38, C.39 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.11, C:A.14 Hydrogen bonds: C:C.34, C:C.39 IPH.8: 9 residues within 4Å: Chain B: H.5 Chain D: C.7, H.10, L.11, A.14, C.34, S.37, I.38, C.39 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:H.10, D:L.11, D:A.14 Hydrogen bonds: D:C.34, D:C.39 IPH.9: 6 residues within 4Å: Chain A: H.5 Chain B: L.17 Chain E: L.11, A.14, C.34, C.39 No protein-ligand interaction detected (PLIP) IPH.10: 8 residues within 4Å: Chain D: H.5 Chain F: H.10, L.11, A.14, C.34, S.37, I.38, C.39 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: F:L.11, F:A.14 Hydrogen bonds: F:C.34, F:C.39 pi-Stacking: D:H.5

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.10 Chain C: H.10 Chain E: H.10 Ligands: CL.6 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C Metal complexes: E:H.10, A:H.10, C:H.10 ZN.4: 4 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: CL.5 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain F Metal complexes: B:H.10, D:H.10, F:H.10

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 7 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.4 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: H.10 Chain C: L.6, H.10 Chain E: L.6, H.10 Ligands: ZN.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoder, J. et al., Des-B29,B30-insulin. To Be Published

Release Date

2021-10-27

Peptides

Insulin B chain,Insulin A chain: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Insulin B chain,Insulin A chain