SMTL ID : 7jpt.1

Structure of an endocytic receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: L.1035, N.1047, F.1048, T.1049 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 2 residues within 4Å: Chain A: Q.1223, N.1224 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.1223 Hydrogen bonds: A:N.1224 NAG.3: 6 residues within 4Å: Chain A: F.495, G.496, N.498, C.499, N.500, T.544 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.495, A:G.496

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gully, B.S. et al., The cryo-EM structure of the endocytic receptor DEC-205. J.Biol.Chem. (2020)

Release Date

2020-12-09

Peptides

Lymphocyte antigen 75: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lymphocyte antigen 75