SMTL ID : 7jqi.1

Structure of wild type Glyoxylate/Hydroxypyruvate reductase A from Escherichia Coli in complex with alpha-ketoglutarate and NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 10 residues within 4Å: Chain A: W.58, G.77, A.78, G.79, M.108, R.240, H.288, A.291, I.292 Ligands: NAP.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.78, A:G.79, A:R.240, A:R.240, A:H.288 Water bridges: A:W.58 Salt bridges: A:R.240, A:R.240, A:H.288 AKG.3: 10 residues within 4Å: Chain B: W.58, G.77, A.78, G.79, M.108, R.240, H.288, A.291, I.292 Ligands: NAP.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:A.78, B:G.79, B:R.240, B:R.240, B:H.288 Water bridges: B:W.58 Salt bridges: B:R.240, B:R.240, B:H.288

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 38 residues within 4Å: Chain A: A.78, G.79, V.80, D.81, R.102, M.108, M.112, G.156, A.157, G.158, V.159, L.160, G.161, W.178, S.179, R.180, T.181, K.183, L.210, L.211, P.212, N.213, T.214, E.216, T.217, L.238, A.239, R.240, D.264, V.265, H.288, V.289, A.290, A.291, I.292, R.323, Y.325 Ligands: AKG.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:A.78, A:L.160 Hydrogen bonds: A:A.157, A:A.157, A:V.159, A:L.160, A:G.161, A:S.179, A:R.180, A:T.181, A:T.181, A:H.288, A:A.290, A:A.291, A:A.291, A:Y.325 Water bridges: A:A.78, A:V.80, A:R.102, A:R.102, A:R.102, A:G.158, A:R.180, A:R.180, A:K.183, A:K.183, A:R.194, A:E.216 Salt bridges: A:R.102, A:R.102, A:K.183 NAP.4: 38 residues within 4Å: Chain B: A.78, G.79, V.80, D.81, R.102, M.108, M.112, G.156, A.157, G.158, V.159, L.160, G.161, W.178, S.179, R.180, T.181, K.183, L.210, L.211, P.212, N.213, T.214, E.216, T.217, L.238, A.239, R.240, D.264, V.265, H.288, V.289, A.290, A.291, I.292, R.323, Y.325 Ligands: AKG.3 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:A.78, B:L.160 Hydrogen bonds: B:A.157, B:A.157, B:V.159, B:L.160, B:G.161, B:S.179, B:R.180, B:T.181, B:T.181, B:D.264, B:H.288, B:A.290, B:A.291, B:A.291, B:Y.325 Water bridges: B:A.78, B:V.80, B:R.102, B:R.102, B:R.102, B:G.158, B:R.180, B:R.180, B:K.183, B:K.183, B:R.194, B:E.216 Salt bridges: B:R.102, B:R.102, B:K.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vuksanovic, N. et al., Structure of wild type Glyoxylate/Hydroxypyruvate reductase A from Escherichia Coli in complex with alpha-ketoglutarate and NADP+. To Be Published

Release Date

2021-09-08

Peptides

Glyoxylate/hydroxypyruvate reductase A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glyoxylate/hydroxypyruvate reductase A

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