SMTL ID : 7jse.1

Adeno-Associated Virus Origin Binding Domain in complex with ssDNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-16-mer

Ligands

8 x DT- DT- DT- DT: DNA (5'-D(*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT.1: 3 residues within 4Å: Chain A: R.120, I.121 Chain I: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.2: 3 residues within 4Å: Chain B: R.120, I.121 Chain J: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.3: 3 residues within 4Å: Chain C: R.120, I.121 Chain K: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.4: 3 residues within 4Å: Chain D: R.120, I.121 Chain L: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.5: 2 residues within 4Å: Chain E: W.30 Chain M: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.6: 3 residues within 4Å: Chain F: R.120, I.121 Chain N: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.7: 2 residues within 4Å: Chain G: R.120 Chain O: R.120 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT.8: 3 residues within 4Å: Chain H: R.120, I.121 Chain P: R.120 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santosh, V. et al., The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA+ machine that can switch between oligomeric states. Nucleic Acids Res. (2020)

Release Date

2020-12-09

Peptides

Protein Rep68: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Protein Rep68