SMTL ID : 7jsj.1

Structure of the NaCT-PF2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.562 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain B: N.562 No protein-ligand interaction detected (PLIP)

2 x X3M: (2R)-2-[2-(4-tert-butylphenyl)ethyl]-2-hydroxybutanedioic acid(Non-covalent)

X3M.2: 20 residues within 4Å: Chain A: L.56, A.57, F.90, S.140, N.141, T.142, G.226, T.227, G.228, P.229, P.407, G.409, I.410, L.413, S.464, N.465, V.466, T.508, P.509 Chain B: W.399 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.410 Hydrogen bonds: A:N.141, A:N.141, A:T.142, A:T.227, A:T.227, A:T.227, A:G.228, A:N.465, A:N.465 X3M.6: 20 residues within 4Å: Chain A: W.399 Chain B: L.56, A.57, F.90, S.140, N.141, T.142, G.226, T.227, G.228, P.229, P.407, G.409, I.410, L.413, S.464, N.465, V.466, T.508, P.509 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.410 Hydrogen bonds: B:N.141, B:N.141, B:T.142, B:T.142, B:T.227, B:G.228, B:N.465, B:N.465, B:T.508

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: S.136, I.139, S.140, N.141, G.220, G.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.139, A:S.140, A:N.141, A:N.141 NA.4: 7 residues within 4Å: Chain A: T.460, T.463, S.464, N.465, A.501, A.507, T.508 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.460, A:T.460 NA.7: 6 residues within 4Å: Chain B: S.136, I.139, S.140, N.141, G.220, G.226 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.139, B:S.140, B:N.141, B:G.226 NA.8: 7 residues within 4Å: Chain B: T.460, T.463, S.464, N.465, A.501, A.507, T.508 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.460, B:T.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, D.B. et al., Structure and inhibition mechanism of the human citrate transporter NaCT. Nature (2021)

Release Date

2021-02-24

Peptides

Solute carrier family 13 member 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 13 member 5

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