SMTL ID : 7jsy.1

Proteinase K soaked with I3C determined by MicroED from a single milled microcrystal

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY 1.78 Å

Oligo State

monomer

Ligands

4 x I3C: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid(Non-covalent)

I3C.1: 9 residues within 4Å: Chain A: L.133, G.134, A.158, G.160, N.161, S.221, G.222, T.223, S.224 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.134, A:N.161, A:T.223, A:T.223, A:T.223, A:S.224 Water bridges: A:N.162, A:N.162, A:N.162 Halogen bonds: A:S.221 I3C.2: 8 residues within 4Å: Chain A: N.5, A.6, P.7, W.8, R.185, S.207, L.209, S.219 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.209 Hydrogen bonds: A:W.8 Salt bridges: A:R.185 Halogen bonds: A:N.5, A:A.6, A:S.207 I3C.3: 5 residues within 4Å: Chain A: R.189, Y.195, N.263, P.265, F.266 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.265, A:P.265 Hydrogen bonds: A:N.263, A:F.266 Salt bridges: A:R.189 I3C.4: 3 residues within 4Å: Chain A: K.258, G.259, N.270 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martynowycz, M.W. et al., Ligand Incorporation into Protein Microcrystals for MicroED by On-Grid Soaking. Structure (2021)

Release Date

2020-10-14

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proteinase K

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