SMTL ID : 7jt8.1

Apo structure of a pseudomurein peptide ligase type E from Methanothermus fervidus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.124, N.301, R.332 Ligands: SO4.5 No protein-ligand interaction detected (PLIP)

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.375, R.378, Q.465 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.465 Water bridges: A:R.375, A:R.375 Salt bridges: A:R.375, A:R.378 SO4.3: 4 residues within 4Å: Chain A: H.439, K.440, K.441, T.444 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.440, A:K.441, A:T.444, A:T.444 Salt bridges: A:H.439, A:K.441 SO4.4: 4 residues within 4Å: Chain A: T.35, L.36, G.37, R.47 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.37 Water bridges: A:T.35, A:L.36, A:L.36 Salt bridges: A:R.47 SO4.5: 8 residues within 4Å: Chain A: N.120, G.121, K.122, S.123, T.124, R.332, F.346 Ligands: MG.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.121, A:G.121, A:S.123, A:T.124 Water bridges: A:K.122, A:N.301 Salt bridges: A:R.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subedi, B.P. et al., Structural characterisation of methanogen pseudomurein cell wall peptide ligases homologous to bacterial MurE/F murein peptide ligases. Microbiology (Reading, Engl.) (2022)

Release Date

2021-09-01

Peptides

Mur ligase middle domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Mur ligase middle domain protein

Related Entries With Identical Sequence