SMTL ID : 7jvb.1 (1 other biounit)

Crystal structure of the SARS-CoV-2 spike receptor-binding domain (RBD) with nanobody Nb20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 4 residues within 4Å: Chain A: T.59, K.61, V.90, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.61, A:K.61 CAC.2: 10 residues within 4Å: Chain A: F.173, L.175, Q.176, S.177 Chain B: R.31, I.49, G.50, A.51, M.55, R.97 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Y. et al., Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2. Science (2020)

Release Date

2020-12-02

Peptides

Spike protein S1: A
Nanobody Nb20: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Spike protein S1

Nanobody Nb20

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