SMTL ID : 7jwj.1

Crystal Structure of B17-C1 TCR-H2Db

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ALA- SER- ASN- GLU- ASN- MET- GLU- THR- MET: Nucleoprotein(Non-covalent)

ALA-SER-ASN-GLU-ASN-MET-GLU-THR-MET.1: 33 residues within 4Å: Chain A: Y.31, Y.69, Y.83, E.87, K.90, Q.94, W.97, V.100, S.101, N.104, L.105, Y.108, L.119, Q.121, F.140, Y.147, T.167, K.170, W.171, S.174, H.179, Y.180, Y.183, E.187, W.191, Y.195 Chain C: R.30 Chain D: D.30, Y.50, R.95, G.96, H.99, T.102 26 PLIP interactions: 1 interactions with chain C, 22 interactions with chain A, 3 interactions with chain D Salt bridges: C:R.30, A:K.170, D:R.95 Hydrophobic interactions: A:W.97, A:V.100, A:L.105, A:Y.183, A:W.191 Hydrogen bonds: A:Y.31, A:Y.83, A:E.87, A:E.87, A:K.90, A:Q.94, A:Q.94, A:S.101, A:N.104, A:Q.121, A:Q.121, A:K.170, A:K.170, A:S.174, A:Y.180, A:Y.195, D:D.30, D:D.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zareie, P. et al., Canonical T cell receptor docking on peptide-MHC is essential for T cell signaling. Science (2021)

Release Date

2021-07-07

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B
B17.C1 TCR alpha chain: C
B17.C1 TCR beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

B17.C1 TCR alpha chain

B17.C1 TCR beta chain

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