SMTL ID : 7jwn.1

Crystal structure of Human Serum Albumin in complex with ketoprofen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x CYS: CYSTEINE(Non-covalent)

CYS.1: 10 residues within 4Å: Chain A: L.30, Q.31, Q.32, C.33, V.76, T.78, L.79, T.82, Y.83, M.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.31, A:Q.32, A:L.79

3 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 9 residues within 4Å: Chain A: Y.400, F.506, K.524, A.527, K.544, V.546, M.547, F.550, S.578 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.506, A:K.524, A:A.527, A:V.546, A:F.550, A:F.550 Salt bridges: A:K.544 MYR.3: 12 residues within 4Å: Chain A: S.341, V.343, R.347, P.383, L.386, I.387, N.390, C.391, C.437, L.452, R.484 Ligands: 9KL.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.343, A:P.383, A:L.386, A:I.387 Hydrogen bonds: A:S.341, A:L.344 Salt bridges: A:R.347, A:R.484 MYR.8: 10 residues within 4Å: Chain A: D.107, H.145, Y.147, F.148, K.189, S.192, R.196, Q.458 Ligands: JGE.7, 9KL.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.145, A:Y.147

3 x 9KL: (2S)-2-[3-(benzenecarbonyl)phenyl]propanoic acid(Non-covalent)

9KL.4: 10 residues within 4Å: Chain A: R.116, M.122, L.134, Y.137, L.138, I.141, A.157, Y.160, F.164 Ligands: 9KL.9 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.138, A:I.141, A:A.157, A:Y.160, A:Y.160, A:Y.160, A:Y.160, A:F.164 Salt bridges: A:R.116 pi-Stacking: A:Y.137 9KL.5: 13 residues within 4Å: Chain A: Y.410, K.413, V.414, V.417, L.422, L.429, L.456, L.459, R.484, F.487, S.488, L.490 Ligands: MYR.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.410, A:Y.410, A:V.414, A:V.417, A:L.422, A:L.429, A:L.456, A:L.459, A:R.484, A:F.487 Hydrogen bonds: A:Y.410 pi-Stacking: A:Y.410 9KL.9: 14 residues within 4Å: Chain A: L.114, I.141, R.144, H.145, F.148, L.153, Y.160, L.184, R.185, G.188, K.189, S.192 Ligands: 9KL.4, MYR.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.141, A:L.153, A:Y.160, A:K.189 Water bridges: A:R.185 Salt bridges: A:H.145 pi-Cation interactions: A:H.145

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: L.197, K.198, F.210, W.213 No protein-ligand interaction detected (PLIP)

1 x JGE: (R)-Ketoprofen(Non-covalent)

JGE.7: 11 residues within 4Å: Chain A: D.186, E.187, K.189, A.190, N.428, V.432, K.435, Y.451, V.455, Q.458 Ligands: MYR.8 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.189, A:N.428, A:V.432, A:Y.451, A:Y.451, A:Y.451, A:V.455, A:Q.458 Salt bridges: A:K.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czub, M.P. et al., Organism-specific differences in the binding of ketoprofen to serum albumin. Iucrj (2022)

Release Date

2020-09-09

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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