SMTL ID : 7jze.1

Dihydrodipicolinate synthase mutant S48W

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: A.152, V.154, K.155, I.157 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.152, A:V.154, A:I.157, H2O.7, H2O.7 K.6: 4 residues within 4Å: Chain B: A.152, V.154, K.155, I.157 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:A.152, B:V.154, B:I.157, H2O.15, H2O.16 K.9: 4 residues within 4Å: Chain C: A.152, V.154, K.155, I.157 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:A.152, C:V.154, C:I.157, H2O.24, H2O.24 K.14: 4 residues within 4Å: Chain D: A.152, V.154, K.155, I.157 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:A.152, D:V.154, D:I.157, H2O.32, H2O.32

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: W.48, A.49, L.51 Chain B: N.80 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.80, A:L.51 Water bridges: B:A.81, B:E.84, B:Y.106, A:W.48, A:A.49, A:H.53 GOL.3: 8 residues within 4Å: Chain A: T.45, Y.133, V.135, R.138, K.161, G.186, V.205, F.244 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.133, A:R.138, A:K.161, A:K.161 Water bridges: A:V.205 GOL.4: 3 residues within 4Å: Chain A: R.21, K.25, L.66 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.21, A:R.21, A:K.25, A:K.25 GOL.5: 4 residues within 4Å: Chain A: D.58, M.61, M.62, D.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.58, A:D.65 GOL.7: 9 residues within 4Å: Chain B: T.44, T.45, Y.133, V.135, R.138, K.161, G.186, F.244, N.248 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.45, B:R.138, B:K.161, B:K.161 GOL.8: 1 residues within 4Å: Chain B: H.125 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.125 GOL.10: 4 residues within 4Å: Chain C: W.48, A.49, L.51 Chain D: N.80 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:L.51, D:N.80 Water bridges: C:W.48, C:A.49, C:H.53, D:A.81, D:Y.106 GOL.11: 8 residues within 4Å: Chain C: T.45, Y.133, V.135, R.138, K.161, G.186, V.205, F.244 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.45, C:Y.133, C:Y.133, C:R.138, C:K.161, C:K.161 Water bridges: C:V.205 GOL.12: 3 residues within 4Å: Chain C: R.21, K.25, L.66 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.21, C:R.21, C:K.25, C:K.25 GOL.13: 4 residues within 4Å: Chain C: D.58, M.61, M.62, D.65 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.58, C:D.65 GOL.15: 9 residues within 4Å: Chain D: T.44, T.45, Y.133, V.135, R.138, K.161, G.186, F.244, N.248 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.44, D:Y.133, D:R.138, D:K.161, D:K.161 GOL.16: 1 residues within 4Å: Chain D: H.125 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Board, A.J. et al., Mapping the uncharted water channel of DHDPS. To Be Published

Release Date

2021-09-22

Peptides

4-hydroxy-tetrahydrodipicolinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

4-hydroxy-tetrahydrodipicolinate synthase

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