SMTL ID : 7jzf.1

Dihydrodipicolinate synthase mutant S48F with pyruvate in the catalytic site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-tetramer

Ligands

8 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: A.152, V.154, K.155, I.157 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.152, A:V.154, A:I.157, H2O.9, H2O.10 K.2: 2 residues within 4Å: Chain A: N.80 Chain B: A.49 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:A.49, H2O.10, H2O.16 K.3: 4 residues within 4Å: Chain B: A.152, V.154, K.155, I.157 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:A.152, B:V.154, B:I.157, H2O.23 K.4: 4 residues within 4Å: Chain B: A.123, E.124, T.126, N.156 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:A.123, B:T.126, H2O.13, H2O.16, H2O.23 K.6: 4 residues within 4Å: Chain C: A.152, V.154, K.155, I.157 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:A.152, C:V.154, C:I.157, H2O.35, H2O.36 K.7: 2 residues within 4Å: Chain C: N.80 Chain D: A.49 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:A.49, H2O.36, H2O.41 K.8: 4 residues within 4Å: Chain D: A.152, V.154, K.155, I.157 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:A.152, D:V.154, D:I.157, H2O.48 K.9: 4 residues within 4Å: Chain D: A.123, E.124, T.126, N.156 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:A.123, D:T.126, H2O.39, H2O.42, H2O.49

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: S.137 Chain B: R.109 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.109, B:R.109, A:S.137, A:S.137 GOL.10: 2 residues within 4Å: Chain C: S.137 Chain D: R.109 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:R.109, D:R.109, C:S.137, C:S.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Board, A.J. et al., Mapping the uncharted water channel of DHDPS. To Be Published

Release Date

2021-09-22

Peptides

4-hydroxy-tetrahydrodipicolinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

4-hydroxy-tetrahydrodipicolinate synthase

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