SMTL ID : 7k0v.1

Crystal structure of bRaf in complex with inhibitor GNE-0749

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-tetramer

Ligands

4 x VQP: N-(3,3-dimethylbutyl)-N'-{2-fluoro-5-[(5-fluoro-3-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)amino]-4-methylphenyl}urea(Non-covalent)

VQP.1: 21 residues within 4Å: Chain A: I.28, V.36, A.46, K.48, E.66, L.70, L.79, I.92, T.94, Q.95, W.96, C.97, L.132, H.139, F.148, I.157, G.158, D.159, F.160, L.162 Chain D: W.169 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.46, A:K.48, A:L.70, A:L.79, A:L.79, A:T.94, A:L.132 Hydrogen bonds: A:K.48, A:E.66, A:E.66, A:C.97, A:D.159, A:D.159 pi-Stacking: A:W.96, A:F.160 VQP.3: 19 residues within 4Å: Chain B: I.28, V.36, A.46, V.47, K.48, E.66, L.70, L.79, I.92, T.94, Q.95, W.96, C.97, H.139, I.157, G.158, D.159, F.160, L.162 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.46, B:K.48, B:L.70, B:L.79, B:T.94, B:L.162 Hydrogen bonds: B:E.66, B:E.66, B:C.97, B:D.159, B:D.159 Water bridges: B:D.159 pi-Stacking: B:F.160 VQP.5: 18 residues within 4Å: Chain C: I.28, V.36, A.46, V.47, K.48, E.66, L.70, L.79, I.92, T.94, Q.95, W.96, C.97, F.148, I.157, G.158, D.159, F.160 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:A.46, C:K.48, C:L.70, C:L.79, C:T.94 Hydrogen bonds: C:K.48, C:E.66, C:E.66, C:C.97, C:D.159 Water bridges: C:D.159 pi-Stacking: C:W.96, C:F.160 VQP.6: 18 residues within 4Å: Chain D: I.28, V.36, A.46, V.47, K.48, E.66, L.70, L.79, I.92, T.94, Q.95, W.96, C.97, H.139, I.157, G.158, D.159, F.160 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:A.46, D:K.48, D:L.70, D:L.79, D:L.79, D:T.94 Hydrogen bonds: D:E.66, D:E.66, D:C.97, D:D.159 Water bridges: D:D.159 pi-Stacking: D:F.160

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: G.180, S.181, I.182, L.183, W.184 Chain C: Q.58 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: S.181, I.182, L.183, W.184 Chain D: Q.58 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huestis, M.P. et al., Targeting KRAS Mutant Cancers via Combination Treatment: Discovery of a 5-Fluoro-4-(3 H )-quinazolinone Aryl Urea pan-RAF Kinase Inhibitor. J.Med.Chem. (2021)

Release Date

2021-05-26

Peptides

Non-specific serine/threonine protein kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Non-specific serine/threonine protein kinase

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