SMTL ID : 7k1h.2 (2 other biounits)

EGFR L858R/V948R in complex with osimertinib and allosteric inhibitor JBJ-09-063

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x VNS: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide(Non-covalent)

VNS.1: 18 residues within 4Å: Chain A: F.32, V.35, A.52, I.53, K.54, E.67, I.68, A.72, M.75, C.84, R.85, L.86, L.97, T.99, D.164, F.165, R.167 Ligands: YY3.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.32, A:E.67, A:I.68, A:M.75, A:L.97, A:T.99, A:F.165 Hydrogen bonds: A:D.164, A:F.165 Salt bridges: A:E.67 VNS.3: 15 residues within 4Å: Chain B: V.35, A.52, I.53, K.54, I.68, M.75, C.84, R.85, L.86, L.97, T.99, D.164, F.165, R.167 Ligands: YY3.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.68, B:M.75, B:L.97, B:T.99 Hydrogen bonds: B:D.164, B:F.165, B:R.167 pi-Stacking: B:F.165

2 x YY3: N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide(Covalent)

YY3.2: 16 residues within 4Å: Chain A: L.27, G.28, G.30, V.35, K.37, A.52, Q.100, L.101, M.102, P.103, G.105, C.106, D.109, L.153, D.164 Ligands: VNS.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.27, A:V.35, A:V.35, A:A.52, A:L.153 Hydrogen bonds: A:M.102, A:M.102 Salt bridges: A:D.109 YY3.4: 14 residues within 4Å: Chain B: L.27, G.28, V.35, A.52, Q.100, L.101, M.102, P.103, G.105, C.106, D.109, L.153, D.164 Ligands: VNS.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.27, B:L.27, B:V.35, B:V.35, B:A.52, B:L.153 Hydrogen bonds: B:M.102, B:M.102 Salt bridges: B:D.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., Molecular basis for cooperative binding and synergy of ATP-site and allosteric EGFR inhibitors. Nat Commun (2022)

Release Date

2021-09-15

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

Epidermal growth factor receptor

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