SMTL ID : 7k1r.1

X-ray Structure of an Enterobacter GH43 Beta-Xylosidase: EcXyl43 F507A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.334, G.363, D.529 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.334, A:G.363, A:D.529, A:D.529, H2O.7, H2O.9 CA.3: 3 residues within 4Å: Chain B: D.334, G.363, D.529 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.334, B:G.363, B:D.529, B:D.529, H2O.17 CA.5: 3 residues within 4Å: Chain C: D.334, G.363, D.529 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.334, C:G.363, C:D.529, C:D.529, H2O.38 CA.6: 3 residues within 4Å: Chain D: D.334, G.363, D.529 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.334, D:G.363, D:D.529, D:D.529, H2O.46, H2O.47

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain B: D.14, W.73, A.74, D.127, E.186, T.206, H.248, R.289 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:A.74, B:E.186, B:T.206, B:T.206, B:H.248, B:R.289 Water bridges: B:E.186, B:E.186, B:R.289 GOL.4: 7 residues within 4Å: Chain C: D.14, A.74, D.127, E.186, T.206, H.248, R.289 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.127, C:R.289, C:R.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Briganti, L. et al., X-ray Structure of an Enterobacter GH43 Beta-Xylosidase: EcXyl43 F507A mutant. To Be Published

Release Date

2021-11-10

Peptides

Beta xylosidase GH43: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
C

Beta xylosidase GH43