SMTL ID : 7k3l.1

Crystal structure of dLC8 in complex with Panoramix TQ peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-2-2-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: L.29, E.30, K.31, Y.32, N.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.30, A:N.33 EDO.2: 3 residues within 4Å: Chain A: Y.65 Chain B: D.6 Chain C: K.44 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: A:Y.65, C:K.44 Water bridges: B:D.6, B:D.6 EDO.3: 2 residues within 4Å: Chain B: A.7, G.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.8 EDO.4: 5 residues within 4Å: Chain C: L.29, E.30, K.31, Y.32, N.33 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.30, C:N.33 EDO.5: 3 residues within 4Å: Chain A: K.44 Chain C: Y.65 Chain D: D.6 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 2 interactions with chain D Hydrogen bonds: C:Y.65, A:K.44 Water bridges: D:D.6, D:D.6 EDO.6: 2 residues within 4Å: Chain D: A.7, G.8 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnabl, J. et al., Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex. Genes Dev. (2021)

Release Date

2021-03-03

Peptides

Dynein light chain 1, cytoplasmic: AC
Protein panoramix: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Dynein light chain 1, cytoplasmic

Protein panoramix

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