SMTL ID : 7k3q.1

An ultra-potent human neutralizing antibody locks the SARS-CoV-2 spike in the closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: K.13, P.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.14

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.44, L.45, E.46, W.47 Chain B: W.98, T.99, F.100 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.45, A:W.47, B:W.98, B:F.100 EDO.3: 2 residues within 4Å: Chain B: T.96, G.97 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.96 Water bridges: A:Q.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tortorici, M.A. et al., Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms. Science (2020)

Release Date

2020-10-07

Peptides

Fab fragment of S2E12 monoclonal antibody, heavy chain: A
Fab fragment of S2E12 monoclonal antibody, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Fab fragment of S2E12 monoclonal antibody, heavy chain

Fab fragment of S2E12 monoclonal antibody, light chain

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