SMTL ID : 7k4e.1

Cryo-EM structure of human TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor 30

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

5 x VUJ: 5-({4-[(1R,4S)-3'-methyl[1,2,3,4-tetrahydro[1,1'-biphenyl]]-4-yl]piperazin-1-yl}methyl)pyridin-2(1H)-one(Non-covalent)

VUJ.1: 6 residues within 4Å: Chain A: F.425, C.463, M.466, I.482, I.486 Chain B: A.561 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.425, A:I.482, A:I.486 VUJ.2: 6 residues within 4Å: Chain B: F.425, C.463, M.466, I.482, I.486 Chain C: A.561 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.425, B:I.482, B:I.486 VUJ.3: 4 residues within 4Å: Chain B: G.579, W.583 Chain C: W.583 Chain D: G.579 No protein-ligand interaction detected (PLIP) VUJ.4: 7 residues within 4Å: Chain C: F.425, F.456, C.463, M.466, I.482, I.486 Chain D: A.561 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.425, C:F.456, C:I.482, C:I.486 VUJ.5: 7 residues within 4Å: Chain A: A.561 Chain D: F.425, F.456, C.463, M.466, I.482, I.486 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.425, D:F.456, D:I.482, D:I.486

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhardwaj, R. et al., Inactivation-mimicking block of the epithelial calcium channel TRPV6. Sci Adv (2020)

Release Date

2020-12-09

Peptides

Transient receptor potential cation channel subfamily V member 6: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 6

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