- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-24-mer
- Ligands
- 6 x K: POTASSIUM ION(Non-covalent)
- 14 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 19 residues within 4Å:- Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
20 PLIP interactions:10 interactions with chain S, 10 interactions with chain A,- Hydrophobic interactions: S:L.19, S:I.22, S:I.22, S:F.26, S:F.26, S:I.49, S:I.49, S:M.52, S:L.71, A:L.19, A:I.22, A:F.26, A:F.26, A:Y.45, A:I.49, A:M.52, A:A.55, A:I.59
- Salt bridges: S:K.53, A:K.53
HEM.4: 19 residues within 4Å:- Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
21 PLIP interactions:10 interactions with chain B, 11 interactions with chain E,- Hydrophobic interactions: B:L.19, B:F.26, B:F.26, B:F.26, B:Y.45, B:I.49, B:M.52, B:L.71, E:L.19, E:I.22, E:I.22, E:F.26, E:F.26, E:I.49, E:I.49, E:M.52, E:A.55, E:I.59
- Water bridges: B:Y.45
- Salt bridges: B:K.53, E:K.53
HEM.6: 17 residues within 4Å:- Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
16 PLIP interactions:8 interactions with chain C, 8 interactions with chain I,- Hydrophobic interactions: C:L.19, C:I.22, C:F.26, C:F.26, C:I.49, C:M.52, C:I.59, I:L.19, I:I.22, I:I.22, I:F.26, I:F.26, I:I.49, I:M.52
- Salt bridges: C:K.53, I:K.53
HEM.9: 20 residues within 4Å:- Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Ligands: HEM.27
22 PLIP interactions:9 interactions with chain P, 13 interactions with chain D,- Hydrophobic interactions: P:L.19, P:F.26, P:F.26, P:Y.45, P:I.49, P:M.52, P:L.71, D:L.19, D:I.22, D:I.22, D:F.26, D:F.26, D:Y.45, D:I.49, D:I.49, D:M.52, D:A.55, D:I.59
- Water bridges: P:K.53, D:K.53
- Salt bridges: P:K.53, D:K.53
HEM.12: 19 residues within 4Å:- Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
21 PLIP interactions:12 interactions with chain K, 9 interactions with chain F,- Hydrophobic interactions: K:L.19, K:I.22, K:I.22, K:F.26, K:F.26, K:F.26, K:I.49, K:I.49, K:M.52, K:L.71, F:L.19, F:I.22, F:F.26, F:F.26, F:I.49, F:M.52, F:A.55, F:I.59
- Water bridges: K:K.53
- Salt bridges: K:K.53, F:K.53
HEM.14: 19 residues within 4Å:- Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
20 PLIP interactions:10 interactions with chain H, 10 interactions with chain J,- Hydrophobic interactions: H:L.19, H:I.22, H:F.26, H:F.26, H:I.49, H:I.49, H:M.52, H:A.55, H:I.59, J:L.19, J:I.22, J:I.22, J:F.26, J:F.26, J:F.26, J:I.49, J:M.52, J:L.71
- Salt bridges: H:K.53, J:K.53
HEM.18: 20 residues within 4Å:- Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56, L.71
- Ligands: HEM.36
25 PLIP interactions:13 interactions with chain L, 12 interactions with chain X,- Hydrophobic interactions: L:L.19, L:I.22, L:I.22, L:F.26, L:F.26, L:F.26, L:Y.45, L:I.49, L:M.52, L:I.59, X:L.19, X:I.22, X:F.26, X:F.26, X:F.26, X:I.49, X:I.49, X:M.52, X:L.71
- Water bridges: L:K.53, L:K.53, X:K.53, X:K.53
- Salt bridges: L:K.53, X:K.53
HEM.20: 19 residues within 4Å:- Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
20 PLIP interactions:10 interactions with chain M, 10 interactions with chain G,- Hydrophobic interactions: M:L.19, M:I.22, M:F.26, M:F.26, M:Y.45, M:I.49, M:M.52, M:A.55, M:I.59, G:L.19, G:I.22, G:I.22, G:F.26, G:F.26, G:I.49, G:I.49, G:M.52, G:L.71
- Salt bridges: M:K.53, G:K.53
HEM.22: 19 residues within 4Å:- Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
21 PLIP interactions:10 interactions with chain N, 11 interactions with chain Q,- Hydrophobic interactions: N:L.19, N:F.26, N:F.26, N:F.26, N:Y.45, N:I.49, N:M.52, N:L.71, Q:L.19, Q:I.22, Q:I.22, Q:F.26, Q:F.26, Q:I.49, Q:I.49, Q:M.52, Q:A.55, Q:I.59
- Water bridges: N:Y.45
- Salt bridges: N:K.53, Q:K.53
HEM.24: 17 residues within 4Å:- Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
16 PLIP interactions:8 interactions with chain O, 8 interactions with chain U,- Hydrophobic interactions: O:L.19, O:I.22, O:F.26, O:F.26, O:I.49, O:M.52, O:I.59, U:L.19, U:I.22, U:I.22, U:F.26, U:F.26, U:I.49, U:M.52
- Salt bridges: O:K.53, U:K.53
HEM.27: 20 residues within 4Å:- Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Ligands: HEM.9
22 PLIP interactions:13 interactions with chain P, 9 interactions with chain D,- Hydrophobic interactions: P:L.19, P:I.22, P:I.22, P:F.26, P:F.26, P:Y.45, P:I.49, P:I.49, P:M.52, P:A.55, P:I.59, D:L.19, D:F.26, D:F.26, D:Y.45, D:I.49, D:M.52, D:L.71
- Water bridges: P:K.53, D:K.53
- Salt bridges: P:K.53, D:K.53
HEM.30: 19 residues within 4Å:- Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
21 PLIP interactions:12 interactions with chain W, 9 interactions with chain R,- Hydrophobic interactions: W:L.19, W:I.22, W:I.22, W:F.26, W:F.26, W:F.26, W:I.49, W:I.49, W:M.52, W:L.71, R:L.19, R:I.22, R:F.26, R:F.26, R:I.49, R:M.52, R:A.55, R:I.59
- Water bridges: W:K.53
- Salt bridges: W:K.53, R:K.53
HEM.32: 19 residues within 4Å:- Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
21 PLIP interactions:11 interactions with chain T, 10 interactions with chain V,- Hydrophobic interactions: T:L.19, T:I.22, T:F.26, T:F.26, T:I.49, T:I.49, T:M.52, T:A.55, T:I.59, V:L.19, V:I.22, V:I.22, V:F.26, V:F.26, V:F.26, V:I.49, V:M.52, V:L.71
- Water bridges: T:Y.45
- Salt bridges: T:K.53, V:K.53
HEM.36: 20 residues within 4Å:- Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, D.56, L.71
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Ligands: HEM.18
25 PLIP interactions:12 interactions with chain L, 13 interactions with chain X,- Hydrophobic interactions: L:L.19, L:I.22, L:F.26, L:F.26, L:F.26, L:I.49, L:I.49, L:M.52, L:L.71, X:L.19, X:I.22, X:I.22, X:F.26, X:F.26, X:F.26, X:Y.45, X:I.49, X:M.52, X:I.59
- Water bridges: L:K.53, L:K.53, X:K.53, X:K.53
- Salt bridges: L:K.53, X:K.53
- 16 x VXM: 4-{[(5-fluoro-2-hydroxyphenyl)methyl]amino}-1H-isoindole-1,3(2H)-dione(Non-covalent)
VXM.5: 11 residues within 4Å:- Chain B: L.68, P.69, N.70, L.71, Q.72
- Chain E: L.27, M.31, L.77, I.79, G.80, E.81
6 PLIP interactions:2 interactions with chain E, 4 interactions with chain B- Hydrophobic interactions: E:I.79, E:I.79, B:L.68
- Hydrogen bonds: B:P.69, B:L.71, B:Q.72
VXM.7: 10 residues within 4Å:- Chain C: L.68, P.69, N.70, L.71, Q.72
- Chain I: L.27, L.77, I.79, G.80, E.81
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain I- Hydrogen bonds: C:P.69, C:L.71, C:Q.72
- Hydrophobic interactions: I:I.79, I:I.79, I:I.79, I:E.81
VXM.10: 8 residues within 4Å:- Chain D: L.68, P.69, N.70, L.71, Q.72
- Chain P: L.27, L.77, I.79
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain P- Hydrophobic interactions: D:L.68, P:I.79, P:I.79
- Hydrogen bonds: D:P.69, D:L.71, D:Q.72
VXM.11: 7 residues within 4Å:- Chain B: L.27, I.79
- Chain E: L.68, P.69, N.70, L.71, Q.72
5 PLIP interactions:3 interactions with chain E, 2 interactions with chain B- Hydrogen bonds: E:P.69, E:L.71, E:Q.72
- Hydrophobic interactions: B:I.79, B:I.79
VXM.13: 11 residues within 4Å:- Chain G: L.68, P.69, N.70, L.71, Q.72
- Chain M: L.27, M.31, L.77, I.79, G.80, E.81
8 PLIP interactions:4 interactions with chain G, 4 interactions with chain M- Hydrophobic interactions: G:L.68, M:I.79, M:I.79, M:E.81
- Hydrogen bonds: G:P.69, G:L.71, G:Q.72, M:E.81
VXM.15: 11 residues within 4Å:- Chain H: L.68, P.69, N.70, L.71, Q.72
- Chain J: L.27, M.31, L.77, I.79, G.80, E.81
6 PLIP interactions:3 interactions with chain H, 3 interactions with chain J- Hydrogen bonds: H:P.69, H:L.71, H:Q.72
- Hydrophobic interactions: J:I.79, J:I.79, J:E.81
VXM.16: 9 residues within 4Å:- Chain C: L.27, L.77, I.79, G.80
- Chain I: L.68, P.69, N.70, L.71, Q.72
5 PLIP interactions:3 interactions with chain I, 2 interactions with chain C- Hydrogen bonds: I:P.69, I:L.71, I:Q.72
- Hydrophobic interactions: C:I.79, C:I.79
VXM.17: 11 residues within 4Å:- Chain H: L.27, M.31, L.77, I.79, G.80, E.81
- Chain J: L.68, P.69, N.70, L.71, Q.72
8 PLIP interactions:4 interactions with chain J, 4 interactions with chain H- Hydrophobic interactions: J:L.68, H:I.79, H:I.79, H:E.81
- Hydrogen bonds: J:P.69, J:L.71, J:Q.72, H:E.81
VXM.23: 11 residues within 4Å:- Chain N: L.68, P.69, N.70, L.71, Q.72
- Chain Q: L.27, M.31, L.77, I.79, G.80, E.81
6 PLIP interactions:4 interactions with chain N, 2 interactions with chain Q- Hydrophobic interactions: N:L.68, Q:I.79, Q:I.79
- Hydrogen bonds: N:P.69, N:L.71, N:Q.72
VXM.25: 10 residues within 4Å:- Chain O: L.68, P.69, N.70, L.71, Q.72
- Chain U: L.27, L.77, I.79, G.80, E.81
7 PLIP interactions:4 interactions with chain U, 3 interactions with chain O- Hydrophobic interactions: U:I.79, U:I.79, U:I.79, U:E.81
- Hydrogen bonds: O:P.69, O:L.71, O:Q.72
VXM.28: 8 residues within 4Å:- Chain D: L.27, L.77, I.79
- Chain P: L.68, P.69, N.70, L.71, Q.72
6 PLIP interactions:4 interactions with chain P, 2 interactions with chain D- Hydrophobic interactions: P:L.68, D:I.79, D:I.79
- Hydrogen bonds: P:P.69, P:L.71, P:Q.72
VXM.29: 7 residues within 4Å:- Chain N: L.27, I.79
- Chain Q: L.68, P.69, N.70, L.71, Q.72
5 PLIP interactions:2 interactions with chain N, 3 interactions with chain Q- Hydrophobic interactions: N:I.79, N:I.79
- Hydrogen bonds: Q:P.69, Q:L.71, Q:Q.72
VXM.31: 11 residues within 4Å:- Chain A: L.27, M.31, L.77, I.79, G.80, E.81
- Chain S: L.68, P.69, N.70, L.71, Q.72
7 PLIP interactions:4 interactions with chain S, 3 interactions with chain A- Hydrophobic interactions: S:L.68, A:I.79, A:I.79, A:E.81
- Hydrogen bonds: S:P.69, S:L.71, S:Q.72
VXM.33: 11 residues within 4Å:- Chain T: L.68, P.69, N.70, L.71, Q.72
- Chain V: L.27, M.31, L.77, I.79, G.80, E.81
7 PLIP interactions:4 interactions with chain V, 3 interactions with chain T- Hydrophobic interactions: V:I.79, V:I.79, V:E.81
- Hydrogen bonds: V:E.81, T:P.69, T:L.71, T:Q.72
VXM.34: 9 residues within 4Å:- Chain O: L.27, L.77, I.79, G.80
- Chain U: L.68, P.69, N.70, L.71, Q.72
5 PLIP interactions:2 interactions with chain O, 3 interactions with chain U- Hydrophobic interactions: O:I.79, O:I.79
- Hydrogen bonds: U:P.69, U:L.71, U:Q.72
VXM.35: 11 residues within 4Å:- Chain T: L.27, M.31, L.77, I.79, G.80, E.81
- Chain V: L.68, P.69, N.70, L.71, Q.72
7 PLIP interactions:4 interactions with chain V, 3 interactions with chain T- Hydrophobic interactions: V:L.68, T:I.79, T:I.79, T:E.81
- Hydrogen bonds: V:P.69, V:L.71, V:Q.72
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soldano, A. et al., Small Molecule Inhibitors of the Bacterioferritin (BfrB)-Ferredoxin (Bfd) Complex Kill Biofilm-Embedded Pseudomonas aeruginosa Cells. Acs Infect Dis. (2021)
- Release Date
- 2020-12-16
- Peptides
- Ferroxidase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
AN
BO
CP
DQ
ER
FS
GT
HU
IV
JW
KX
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-24-mer
- Ligands
- 6 x K: POTASSIUM ION(Non-covalent)
- 14 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 16 x VXM: 4-{[(5-fluoro-2-hydroxyphenyl)methyl]amino}-1H-isoindole-1,3(2H)-dione(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soldano, A. et al., Small Molecule Inhibitors of the Bacterioferritin (BfrB)-Ferredoxin (Bfd) Complex Kill Biofilm-Embedded Pseudomonas aeruginosa Cells. Acs Infect Dis. (2021)
- Release Date
- 2020-12-16
- Peptides
- Ferroxidase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
AN
BO
CP
DQ
ER
FS
GT
HU
IV
JW
KX
L