SMTL ID : 7k62.2 (1 other biounit)

Crystal Structure of Dihydrofolate reductase from Mycobacterium kansasii in complex with NADP and inhibitor P218

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: W.14, A.15, I.22, G.23, G.26, D.27, I.28, G.51, R.52, R.53, T.54, L.73, S.74, R.75, Q.76, G.88, S.89, I.103, G.104, G.105, E.106, Q.107, I.108, Y.109, L.111, A.135 Ligands: MMV.2 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:I.28, A:T.54 Hydrogen bonds: A:A.15, A:I.22, A:R.24, A:G.26, A:G.26, A:G.51, A:R.52, A:R.52, A:R.53, A:R.53, A:T.54, A:R.75, A:R.75, A:Q.76, A:Q.76, A:G.104, A:G.105, A:E.106, A:Q.107, A:I.108, A:Y.109 Water bridges: A:G.23, A:R.24, A:S.57, A:E.106, A:E.106 Salt bridges: A:R.52, A:R.53 pi-Cation interactions: A:R.75

1 x MMV: 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid(Non-covalent)

MMV.2: 17 residues within 4Å: Chain A: I.13, W.14, A.15, I.28, D.35, L.36, F.39, K.40, L.58, P.59, L.65, P.66, R.68, I.103, Y.109, T.122 Ligands: NAP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.28, A:L.36, A:P.59, A:L.65 Hydrogen bonds: A:I.13, A:T.122, A:T.122 Water bridges: A:K.40, A:K.40 Salt bridges: A:D.35, A:K.40, A:R.68

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: W.30, R.31, V.32 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.32, A:V.32 Water bridges: A:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of Dihydrofolate reductase from Mycobacterium kansasii in complex with NADP and inhibitor P218. To Be Published

Release Date

2021-03-17

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dihydrofolate reductase

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