SMTL ID : 7k7r.2 (1 other biounit)

EBNA1 peptide AA386-405 with Fab MS39p2w174

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.51, Y.54 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain B: S.190, S.191, T.194, Q.195 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.194, B:Q.195 GOL.3: 3 residues within 4Å: Chain B: W.33, Q.53 Chain C: R.12 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:W.33, B:Q.53, C:R.12 GOL.4: 5 residues within 4Å: Chain B: V.2, G.26, F.27, Y.32, R.98 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.98, B:R.98 GOL.5: 5 residues within 4Å: Chain B: R.19, T.69, S.70, S.71, Q.82 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.69, B:T.69, B:S.71, B:Q.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lanz, T.V. et al., Clonally expanded B cells in multiple sclerosis bind EBV EBNA1 and GlialCAM. Nature (2022)

Release Date

2022-01-12

Peptides

Fab LC MS39p2w174: A
Fab HC MS39p2w174: B
EBNA1 peptide AA386-405: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Fab LC MS39p2w174

Fab HC MS39p2w174

EBNA1 peptide AA386-405

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