SMTL ID : 7k99.1 (1 other biounit)

Crystal Structure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: A.84, F.152, I.243, L.246, Y.247, S.252, L.253 Ligands: GOL.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.243, A:L.253 Water bridges: A:S.252, A:Y.296 GOL.7: 3 residues within 4Å: Chain A: M.1, K.3, E.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.1, A:M.1, A:K.3 GOL.8: 8 residues within 4Å: Chain A: G.85, F.152, S.177, F.181, I.294, S.295, Y.296 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.177

1 x W4M: (hydroxy{(1S)-1-(methylsulfanyl)-2-[5-({4-[(morpholin-4-yl)methyl]phenyl}ethynyl)-1H-benzotriazol-1-yl]ethyl}amino)methanol(Non-covalent)

W4M.2: 21 residues within 4Å: Chain A: L.18, H.19, M.62, T.75, E.77, H.78, I.102, T.190, F.191, I.197, R.201, A.206, G.209, S.210, V.211, A.214, V.216, H.237, D.241, H.264 Ligands: ZN.9 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.18, A:T.190, A:I.197, A:I.197, A:A.206, A:A.214, A:V.216 Hydrogen bonds: A:E.77, A:T.190 Salt bridges: A:E.77, A:D.241

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: E.139, K.142, K.261, S.262, G.263, H.264, A.265, L.266 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.139, A:G.263, A:G.263, A:A.265, A:L.266 Water bridges: A:K.142 Salt bridges: A:K.142 SO4.4: 5 residues within 4Å: Chain A: M.1, E.287, D.288, A.289, R.290 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.287, A:D.288, A:A.289, A:R.290 Salt bridges: A:R.290 SO4.5: 3 residues within 4Å: Chain A: V.48, E.49, K.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.49, A:E.49 Salt bridges: A:K.68 SO4.6: 2 residues within 4Å: Chain A: T.179, K.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.179, A:T.179 Salt bridges: A:K.183

1 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: W4M.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furuya, T. et al., N-Hydroxyformamide LpxC inhibitors, their in vivo efficacy in a mouse Escherichia coli infection model, and their safety in a rat hemodynamic assay. Bioorg.Med.Chem. (2020)

Release Date

2020-11-25

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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