SMTL ID : 7kac.1

Crystal structure of HPK1 (MAP4K1) kinase in complex with 5-{[4-{[(1S)-2-HYDROXY-1-PHENYLETHYL]AMINO}-5-(1,3,4-OXADIAZOL-2-YL)PYRIMIDIN-2-YL]AMINO}-3,3-DIMETHYL-2-BENZOFURAN-1(3H)-ONE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x W9D: 5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one(Non-covalent)

W9D.1: 21 residues within 4Å: Chain A: L.44, G.45, G.46, Y.49, V.52, A.65, K.67, V.96, M.112, E.113, F.114, C.115, G.116, G.118, S.119, D.122, A.162, L.165, A.175, D.176, F.177 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.44, A:Y.49, A:V.52, A:V.52, A:V.96, A:V.96, A:M.112 Hydrogen bonds: A:E.113, A:C.115, A:D.122, A:D.176 Water bridges: A:S.119 W9D.2: 21 residues within 4Å: Chain B: L.44, G.45, G.46, V.52, A.65, K.67, L.87, V.96, M.112, E.113, F.114, C.115, G.116, G.118, S.119, D.122, A.162, L.165, A.175, D.176, F.177 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.44, B:L.44, B:V.52, B:V.52, B:V.96, B:M.112 Hydrogen bonds: B:E.113, B:C.115, B:G.118, B:D.122, B:D.176 Water bridges: B:S.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, W.L. et al., Using yeast surface display to engineer a soluble and crystallizable construct of hematopoietic progenitor kinase 1 (HPK1). Acta Crystallogr.,Sect.F (2021)

Release Date

2021-01-13

Peptides

Isoform 2 of Mitogen-activated protein kinase kinase kinase kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoform 2 of Mitogen-activated protein kinase kinase kinase kinase 1