SMTL ID : 7kcm.1

Full-length human mitochondrial Hsp90 (TRAP1) in complex with SdhB in the presence of AMP-PNP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: E.62, N.66, A.70, K.73, D.105, M.110, N.118, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.2, K.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.66, A:K.73, A:D.105, A:G.126, A:S.127, A:G.146, A:Q.147, A:F.148, A:G.149, A:G.151, A:F.152, A:R.349 ANP.4: 22 residues within 4Å: Chain B: E.62, N.66, A.70, K.73, D.105, M.110, N.118, R.124, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.5, K.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:E.62, B:N.66, B:K.73, B:D.105, B:N.118, B:G.126, B:S.127, B:S.127, B:G.146, B:Q.147, B:F.148, B:G.149, B:G.151, B:F.152, B:T.198, B:R.349

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.62, N.66 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain B: E.62, N.66, G.146 Ligands: ANP.4 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:N.118, A:G.149, A:Y.153 K.6: 6 residues within 4Å: Chain B: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.118, B:T.121, B:R.124, B:G.149, B:Y.153

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.7: 11 residues within 4Å: Chain C: R.65, S.66, C.67, R.68, G.70, I.71, C.72, G.73, S.74, C.75, C.87 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.67, C:C.72, C:C.75, C:C.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.X. et al., Cryo-EM reveals the dynamic interplay between mitochondrial Hsp90 and SdhB folding intermediates. To Be Published

Release Date

2021-10-13

Peptides

Heat shock protein 75 kDa, mitochondrial: AB
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Heat shock protein 75 kDa, mitochondrial

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial

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