SMTL ID : 7kcp.1

Crystal structure of Acetyl-CoA Synthetase in Complex with Adenosine-5'-propylphosphate from Coccidioides posadasii C735

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x PRX: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER(Non-covalent)

PRX.1: 16 residues within 4Å: Chain A: I.342, T.343, V.417, G.418, E.419, P.420, D.442, T.443, Y.444, W.445, Q.446, T.447, D.533, I.545, R.548, R.559 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.342, A:V.417, A:W.445 Hydrogen bonds: A:G.418, A:T.443, A:W.445, A:Q.446, A:T.447, A:D.533, A:R.548 Water bridges: A:I.421 Salt bridges: A:R.559 pi-Stacking: A:Y.444, A:Y.444

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: K.241 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.241, H2O.6, H2O.11

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: K.86, D.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.86, A:D.89 EDO.4: 5 residues within 4Å: Chain A: L.81, R.118, H.119, L.354, L.355 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: H.119, R.122, K.126, G.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.119, A:G.356 EDO.6: 4 residues within 4Å: Chain A: R.140, I.142, E.150, F.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140 Water bridges: A:E.178, A:E.178 EDO.7: 2 residues within 4Å: Chain A: L.240, R.265 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.265 Water bridges: A:V.246 EDO.8: 3 residues within 4Å: Chain A: D.237, T.262, R.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.262, A:R.265, A:R.265 EDO.9: 4 residues within 4Å: Chain A: R.76, M.77, D.80, Y.323 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.323 EDO.10: 4 residues within 4Å: Chain A: K.159, L.280, P.281, E.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.159, A:E.283 EDO.11: 7 residues within 4Å: Chain A: Y.131, R.140, I.176, P.177, E.178, F.252, R.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:E.178 EDO.12: 3 residues within 4Å: Chain A: A.486, E.487, F.528 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.487 EDO.13: 3 residues within 4Å: Chain A: D.376, E.379, K.380 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.376, A:K.380 Water bridges: A:D.376, A:K.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., to be published. to be published

Release Date

2020-10-21

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyl-coenzyme A synthetase