SMTL ID : 7kds.1

Crystal structure of Acetyl-CoA synthetase 2 in complex with Adenosine-5'-propylphosphate from Candida albicans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x PRX: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER(Non-covalent)

PRX.1: 16 residues within 4Å: Chain A: I.340, T.341, G.417, E.418, P.419, D.441, T.442, Y.443, W.444, Q.445, T.446, D.532, R.547, N.553, G.556, R.558 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.340, A:W.444 Hydrogen bonds: A:G.417, A:D.441, A:W.444, A:Q.445, A:T.446, A:D.532, A:R.547, A:N.553 Salt bridges: A:R.558 pi-Stacking: A:Y.443, A:Y.443 PRX.3: 16 residues within 4Å: Chain B: I.340, T.341, G.417, E.418, P.419, D.441, T.442, Y.443, W.444, Q.445, T.446, D.532, R.547, N.553, G.556, R.558 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.340, B:W.444 Hydrogen bonds: B:G.417, B:D.441, B:W.444, B:Q.445, B:T.446, B:D.532, B:R.547, B:N.553 Salt bridges: B:R.558 pi-Stacking: B:Y.443, B:Y.443 PRX.5: 16 residues within 4Å: Chain C: I.340, T.341, G.417, E.418, P.419, D.441, T.442, Y.443, W.444, Q.445, T.446, D.532, R.547, N.553, G.556, R.558 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:I.340, C:W.444 Hydrogen bonds: C:G.417, C:D.441, C:W.444, C:Q.445, C:T.446, C:D.532, C:R.547, C:N.553 Salt bridges: C:R.558 pi-Stacking: C:Y.443, C:Y.443

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: E.105 Chain B: E.105 Chain C: E.105 Ligands: NA.4, NA.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.105 NA.4: 5 residues within 4Å: Chain A: E.105 Chain B: E.105 Chain C: E.105 Ligands: NA.2, NA.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.105 NA.6: 5 residues within 4Å: Chain A: E.105 Chain B: E.105 Chain C: E.105 Ligands: NA.2, NA.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of Acetyl-CoA synthetase 2 in complex with Adenosine-5'-propylphosphate from Candida albicans. To Be Published

Release Date

2020-11-11

Peptides

Acetyl-coenzyme A synthetase 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Acetyl-coenzyme A synthetase 2

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