SMTL ID : 7ke0.1

HIV-1 Integrase catalytic core domain complexed with allosteric inhibitor STP03-0404

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x WBV: (2S)-tert-butoxy{4-(4-chlorophenyl)-2,3,6-trimethyl-1-[(1-methyl-1H-pyrazol-4-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-5-yl}acetic acid(Non-covalent)

WBV.1: 14 residues within 4Å: Chain A: Q.49, Y.53, L.56, T.78, T.79, A.82, A.83, W.86 Chain B: Q.122, A.123, E.124, H.125, T.128, M.132 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:Q.49, A:Y.53, A:T.79, A:A.82, B:T.128 Hydrogen bonds: B:E.124, B:H.125, B:T.128 Water bridges: B:E.124 Salt bridges: B:H.125 WBV.2: 14 residues within 4Å: Chain A: Q.122, A.123, E.124, H.125, T.128, M.132 Chain B: Q.49, Y.53, L.56, T.78, T.79, A.82, A.83, W.86 11 PLIP interactions: 5 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:Q.49, B:Y.53, B:T.79, B:A.82, A:T.128 Water bridges: B:Q.49 Hydrogen bonds: A:E.124, A:H.125, A:T.128, A:T.128 Salt bridges: A:H.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maehigashi, T. et al., A highly potent and safe pyrrolopyridine-based allosteric HIV-1 integrase inhibitor targeting host LEDGF/p75-integrase interaction site. Plos Pathog. (2021)

Release Date

2021-09-22

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

Related Entries With Identical Sequence