SMTL ID : 7kf9.1

Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 9 residues within 4Å: Chain B: L.74, K.159, E.160, A.162, V.184 Chain C: Q.48, P.49, N.103 Chain K: F.75 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.2: 9 residues within 4Å: Chain C: F.75 Chain F: L.74, K.159, E.160, A.162, V.184 Chain G: Q.48, P.49, N.103 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.3: 9 residues within 4Å: Chain G: F.75 Chain J: L.74, K.159, E.160, A.162, V.184 Chain K: Q.48, P.49, N.103 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain B: E.239, L.258, N.261, Y.265 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: G.122 Chain B: K.269, N.272 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.269 Hydrogen bonds: B:N.272 NAG.6: 2 residues within 4Å: Chain B: T.231, N.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.232 NAG.7: 4 residues within 4Å: Chain F: E.239, L.258, N.261, Y.265 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain E: G.122 Chain F: K.269, N.272 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:K.269 Hydrogen bonds: F:N.272 NAG.9: 2 residues within 4Å: Chain F: T.231, N.232 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.232 NAG.10: 4 residues within 4Å: Chain J: E.239, L.258, N.261, Y.265 No protein-ligand interaction detected (PLIP) NAG.11: 3 residues within 4Å: Chain I: G.122 Chain J: K.269, N.272 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:K.269 Hydrogen bonds: J:N.272 NAG.12: 2 residues within 4Å: Chain J: T.231, N.232 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:N.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murin, C.D. et al., Convergence of a common solution for broad ebolavirus neutralization by glycan cap-directed human antibodies. Cell Rep (2021)

Release Date

2021-04-28

Peptides

Antibody Fab EBOV-296 heavy chain: AEI
Virion spike glycoprotein 1: BFJ
Virion spike glycoprotein 2: CGK
Antibody Fab EBOV-296 light chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

E
I

I
H

B
A

F
C

J
B

C
D

G
F

K
E

D
J

H
L

L
K

Antibody Fab EBOV-296 heavy chain

Virion spike glycoprotein 1

Virion spike glycoprotein 2

Antibody Fab EBOV-296 light chain

Related Entries With Identical Sequence