SMTL ID : 7kfe.1

Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 6 residues within 4Å: Chain E: L.70, E.156, A.158, V.180 Chain F: N.62 Chain H: I.31 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:I.31 NAG-NAG-BMA-MAN-MAN.3: 6 residues within 4Å: Chain G: L.70, E.156, A.158, V.180 Chain H: N.62 Chain J: L.28 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:L.28 NAG-NAG-BMA-MAN-MAN.5: 6 residues within 4Å: Chain F: L.28 Chain I: L.70, E.156, A.158, V.180 Chain J: N.62 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:L.28

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain G: F.234, Q.235, V.236, N.257, Y.261 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:Y.261 NAG-NAG.4: 4 residues within 4Å: Chain I: T.217, V.254, N.257, Y.261 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:Y.261

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain G: T.227, N.228 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain I: T.227, N.228 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murin, C.D. et al., Convergence of a common solution for broad ebolavirus neutralization by glycan cap-directed human antibodies. Cell Rep (2021)

Release Date

2021-04-28

Peptides

Antibody BDBV-329 heavy chain: AC
Antibody BDBV-329 light chain: BD
Spike glycoprotein 1: EGI
Envelope glycoprotein 2: FHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
G

B
J

D
I

E
A

G
B

I
C

F
D

H
E

J
F

Antibody BDBV-329 heavy chain

Antibody BDBV-329 light chain

Spike glycoprotein 1

Envelope glycoprotein 2

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