SMTL ID : 7kg4.1 (1 other biounit)

Recombinant Beta-2-Glycoprotein I antibody recognition loop mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- FUC: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-FUC.1: 4 residues within 4Å: Chain A: H.172, N.174, W.175, K.177 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 4 residues within 4Å: Chain A: L.232, N.234, W.235, S.236 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.143 NAG.4: 2 residues within 4Å: Chain A: N.164, T.166 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klenotic, P.A. et al., Beta-2-Glycoprotein I and its role in APS. To be published

Release Date

2021-10-20

Peptides

Beta-2-glycoprotein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-2-glycoprotein 1

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