- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.63 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.2: 27 residues within 4Å:- Chain A: G.24, Y.25, G.26, S.27, Q.28, I.47, R.48, S.52, V.66, L.79, L.80, P.81, D.82, I.84, Q.85, V.88, A.106, H.107, P.129, G.131, P.132, G.133
- Chain B: S.249, I.250, S.251
- Ligands: NAP.1, WBY.6
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Q.28
- Hydrogen bonds: A:Y.25, A:Y.25, A:S.27, A:S.27, A:S.27, A:Q.28, A:R.48, A:S.52, A:S.52, A:L.80, A:Q.85, A:H.107, A:G.133, B:S.249
- Water bridges: A:H.107
- Salt bridges: A:R.48
- pi-Cation interactions: A:R.48
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: K.130, D.190
- Ligands: MG.4, WBY.6
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.190, H2O.1, H2O.1, H2O.2
MG.4: 4 residues within 4Å:- Chain A: D.190, E.194
- Ligands: MG.3, WBY.6
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.190, A:E.194, H2O.1, H2O.1
MG.5: 6 residues within 4Å:- Chain A: V.70, K.71, A.73, D.74, E.98, N.101
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:A.73, A:E.98
MG.8: 3 residues within 4Å:- Chain B: K.130, D.190
- Ligands: WBY.7
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.190, H2O.2, H2O.2, H2O.2
MG.9: 3 residues within 4Å:- Chain B: D.190, E.194
- Ligands: WBY.7
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.190, B:E.194, H2O.2, H2O.3
- 2 x WBY: 6-hydroxy-2-methyl[1,3]thiazolo[4,5-d]pyrimidine-5,7(4H,6H)-dione(Non-covalent)
WBY.6: 14 residues within 4Å:- Chain A: P.132, D.190, E.194
- Chain B: E.230, I.234, L.237, S.249, I.250, S.251, A.254
- Ligands: NAP.1, NDP.2, MG.3, MG.4
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:I.234, B:L.237, A:P.132
- Hydrogen bonds: B:S.251, B:S.251, B:S.251, A:G.131
- Water bridges: B:E.226, B:E.230, A:K.130
WBY.7: 8 residues within 4Å:- Chain A: L.233, S.249, I.250, S.251
- Chain B: D.190, E.194
- Ligands: MG.8, MG.9
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.233
- Hydrogen bonds: A:S.251, A:S.251, A:S.251, B:D.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, X. et al., Discovery of a Pyrimidinedione Derivative with Potent Inhibitory Activity against Mycobacterium tuberculosis Ketol-Acid Reductoisomerase. Chemistry (2021)
- Release Date
- 2021-07-14
- Peptides
- Ketol-acid reductoisomerase (NADP(+)): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.63 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x WBY: 6-hydroxy-2-methyl[1,3]thiazolo[4,5-d]pyrimidine-5,7(4H,6H)-dione(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, X. et al., Discovery of a Pyrimidinedione Derivative with Potent Inhibitory Activity against Mycobacterium tuberculosis Ketol-Acid Reductoisomerase. Chemistry (2021)
- Release Date
- 2021-07-14
- Peptides
- Ketol-acid reductoisomerase (NADP(+)): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B