SMTL ID : 7khk.1 (1 other biounit)

Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX9486 (bezuclastinib) in the DFG-in state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x WEJ: 4,5-dimethyl-N-(2-phenyl-1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazole-3-carboxamide(Non-covalent)

WEJ.1: 15 residues within 4Å: Chain A: L.54, V.62, A.80, K.82, E.99, V.127, T.129, E.130, Y.131, C.132, C.133, G.135, L.200, C.210, D.211 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.62, A:K.82, A:E.99, A:V.127, A:T.129, A:L.200 Hydrogen bonds: A:K.82, A:E.99, A:T.129, A:T.129, A:C.132, A:C.132, A:D.211, A:D.211 pi-Cation interactions: A:K.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, A.J. et al., Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial. Jama Oncol (2021)

Release Date

2021-07-07

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mast/stem cell growth factor receptor Kit

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