- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x X1A: N-(5-{[6-(5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)-2,6-diazaspiro[3.4]octan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: P.346, L.347, S.348, D.386
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.347, A:S.348, A:S.348, A:S.348
SO4.4: 4 residues within 4Å:- Chain A: E.78, D.118, G.119, D.120
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.119, A:D.120
SO4.5: 5 residues within 4Å:- Chain A: N.285, K.290, D.328, P.329, S.330
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.285, A:D.328, A:D.328, A:S.330, A:S.330
- Salt bridges: A:K.290
SO4.6: 2 residues within 4Å:- Chain A: R.523, F.571
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.523
SO4.7: 4 residues within 4Å:- Chain A: R.234, F.235, D.236, A.239
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.235, A:D.236, A:D.236
SO4.8: 2 residues within 4Å:- Chain A: R.317, A.318
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.318
- Salt bridges: A:R.317
SO4.9: 3 residues within 4Å:- Chain A: P.514, E.515, V.516
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.515
SO4.13: 4 residues within 4Å:- Chain B: V.311, S.312, N.313, G.314
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.312, B:N.313, B:N.313
- Water bridges: B:G.314, B:G.314
SO4.14: 5 residues within 4Å:- Chain B: N.285, K.290, D.328, P.329, S.330
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.285, B:S.330, B:S.330
- Salt bridges: B:K.290
SO4.15: 5 residues within 4Å:- Chain B: V.39, G.40, E.41, E.42, E.43
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.40, B:E.41, B:E.42, B:E.42, B:E.43
SO4.16: 3 residues within 4Å:- Chain B: H.165, Q.166, R.208
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.166, B:R.208
- Water bridges: B:Q.166
- Salt bridges: B:H.165
SO4.17: 3 residues within 4Å:- Chain B: R.234, F.235, D.236
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:F.235, B:D.236, B:D.236, B:D.236
- Salt bridges: B:K.276
SO4.18: 2 residues within 4Å:- Chain B: R.359, N.360
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.360, B:N.360, B:D.394
SO4.19: 2 residues within 4Å:- Chain B: R.317, A.318
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.318
- Salt bridges: B:R.317
SO4.20: 4 residues within 4Å:- Chain B: R.523, S.570, F.571, A.572
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.571
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Martinez-Viturro, C.M. et al., Diazaspirononane Nonsaccharide Inhibitors of O-GlcNAcase (OGA) for the Treatment of Neurodegenerative Disorders. J.Med.Chem. (2020)
- Release Date
- 2020-12-02
- Peptides
- O-GlcNAcase NagJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x X1A: N-(5-{[6-(5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)-2,6-diazaspiro[3.4]octan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Martinez-Viturro, C.M. et al., Diazaspirononane Nonsaccharide Inhibitors of O-GlcNAcase (OGA) for the Treatment of Neurodegenerative Disorders. J.Med.Chem. (2020)
- Release Date
- 2020-12-02
- Peptides
- O-GlcNAcase NagJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D